Expression of 1-1-8.2.11.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.042530.827
27DAP/17DAP1.054610.926
39DAP/27DAP1.098050.779
41DAP/39DAP0.999350.871
42DAP/41DAP1.127310.755
43DAP/42DAP0.967520.9
47DAP/43DAP0.805710.39
52DAP/47DAP0.98940.932
57DAP/52DAP0.981060.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.197660.057
17DAP/reference1.076330.185
27DAP/reference1.052160.239
39DAP/reference1.017240.842
41DAP/reference1.099760.421
42DAP/reference1.204210.001
43DAP/reference1.065190.518
47DAP/reference1.109130.015
52DAP/reference1.132750.141
57DAP/reference1.061380.344

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.021070.797
27DAP/17DAP0.970090.475
39DAP/27DAP0.979440.737
41DAP/39DAP0.973810.849
42DAP/41DAP1.000731
43DAP/42DAP0.971980.538
47DAP/43DAP0.952490.476
52DAP/47DAP0.978230.886
57DAP/52DAP1.028860.871
57DAP/7DAP0.92531

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.163840.082
17DAP/reference1.196650.007
27DAP/reference1.264510.011
39DAP/reference1.021030.74
41DAP/reference1.089360.097
42DAP/reference1.091130.233
43DAP/reference1.364480.093
47DAP/reference1.019080.965
52DAP/reference1.083080.375
57DAP/reference1.179490.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.144470.196
17DAP/reference1.29480.117
27DAP/reference1.186080.146
39DAP/reference1.276670.063
41DAP/reference1.189770.142
42DAP/reference1.176820.099
43DAP/reference1.386020.112
47DAP/reference1.159340.026
52DAP/reference1.241690.027
57DAP/reference1.136350.161

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.158260.026
17DAP/reference1.090420.365
27DAP/reference1.294790.029
39DAP/reference1.292610.019
41DAP/reference1.153720.06
42DAP/reference1.245910.023
43DAP/reference1.23620.045
47DAP/reference0.96030.286
52DAP/reference1.074380.583
57DAP/reference1.219420.055

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.952681
26DAP/20DAP0.959150.512
34DAP/26DAP1.006911
51DAP/34DAP0.972160.714
52DAP/51DAP0.99281
53DAP/52DAP0.947630.854
55DAP/53DAP0.945580.796
57DAP/55DAP1.016150.986
62DAP/57DAP1.021231
68DAP/62DAP0.934870.747
68DAP/14DAP0.839351

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.974880.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.41290.113
Mature Green Tomato/Ripe Tomato1.073750.752
Immature Eggplant/Mature Eggplant1.186740.239
Ripe Pepper/Ripe Tomato1.617580.258
Mature Eggplant/Ripe Tomato1.644020.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.933910.944
1-1-2/M821.058731
12-2/M820.937250.727
12-4/M821.004631
1-3/M820.982561
2-1-1/M820.853370.465
2-1/M821.16981
2-6/M820.945761
3-2/M820.996181
4-1-1/M821.012471
4-1/M820.900420.737
4-3-2/M820.793180.487
4-3/M820.797570.72
5-3/M820.947211
6-2/M820.958741
6-3/M820.992061
7-1/M821.021781
7-2/M820.92880.881
9-3-2/M820.856750.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.077781
IL2-6/WTpooled1.201620.531
IL7-5/WTpooled1.07974
IL7-3/WTpooled0.79350.298
IL12-4/WTpooled0.876930.71
IL1-4/WTpooled1.321781
WT/WTpooled0.930271

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.835560.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.051190.921
DC3000/delta hrp 6h1.063551
DC3000/delta hrp 12h1.031541
DC3000/delta hrp 24h1.096080.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.214970.042
DC3000 delta B/DC3000 delta AB1.142310.311

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.141311
Exp 36h1.333280.693
Exp 60h1.080571

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99631
Var 0h1.416260.339
Var 12h I row2-row11.101730.379
Var 12h NI row2-row11.029241
Var 36h I row2-row10.9841
Var 36h NI row2-row10.936080.645
Var 60h I row2-row11.075371
Var 60h NI row2-row11.1160.904
Time course 0hI-0hNI1.028220.852
Time course 12hI-12hNI0.975780.827
Time course 36hI-36hNI1.104530.147
Time course 60hI-60hNI1.447560.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.886960.529
transgenic ySAMdc/azygous control (breaker)1.093811
transgenic ySAMdc/azygous control (red)1.106220.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.93910.077

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.192660.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.82251
Manapal/WT (break)1.018911
Manapal/WT (red)2.497450.15