Expression of 1-1-8.2.11.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04253 | 0.827 |
27DAP/17DAP | 1.05461 | 0.926 |
39DAP/27DAP | 1.09805 | 0.779 |
41DAP/39DAP | 0.99935 | 0.871 |
42DAP/41DAP | 1.12731 | 0.755 |
43DAP/42DAP | 0.96752 | 0.9 |
47DAP/43DAP | 0.80571 | 0.39 |
52DAP/47DAP | 0.9894 | 0.932 |
57DAP/52DAP | 0.98106 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19766 | 0.057 |
17DAP/reference | 1.07633 | 0.185 |
27DAP/reference | 1.05216 | 0.239 |
39DAP/reference | 1.01724 | 0.842 |
41DAP/reference | 1.09976 | 0.421 |
42DAP/reference | 1.20421 | 0.001 |
43DAP/reference | 1.06519 | 0.518 |
47DAP/reference | 1.10913 | 0.015 |
52DAP/reference | 1.13275 | 0.141 |
57DAP/reference | 1.06138 | 0.344 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02107 | 0.797 |
27DAP/17DAP | 0.97009 | 0.475 |
39DAP/27DAP | 0.97944 | 0.737 |
41DAP/39DAP | 0.97381 | 0.849 |
42DAP/41DAP | 1.00073 | 1 |
43DAP/42DAP | 0.97198 | 0.538 |
47DAP/43DAP | 0.95249 | 0.476 |
52DAP/47DAP | 0.97823 | 0.886 |
57DAP/52DAP | 1.02886 | 0.871 |
57DAP/7DAP | 0.9253 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16384 | 0.082 |
17DAP/reference | 1.19665 | 0.007 |
27DAP/reference | 1.26451 | 0.011 |
39DAP/reference | 1.02103 | 0.74 |
41DAP/reference | 1.08936 | 0.097 |
42DAP/reference | 1.09113 | 0.233 |
43DAP/reference | 1.36448 | 0.093 |
47DAP/reference | 1.01908 | 0.965 |
52DAP/reference | 1.08308 | 0.375 |
57DAP/reference | 1.17949 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14447 | 0.196 |
17DAP/reference | 1.2948 | 0.117 |
27DAP/reference | 1.18608 | 0.146 |
39DAP/reference | 1.27667 | 0.063 |
41DAP/reference | 1.18977 | 0.142 |
42DAP/reference | 1.17682 | 0.099 |
43DAP/reference | 1.38602 | 0.112 |
47DAP/reference | 1.15934 | 0.026 |
52DAP/reference | 1.24169 | 0.027 |
57DAP/reference | 1.13635 | 0.161 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15826 | 0.026 |
17DAP/reference | 1.09042 | 0.365 |
27DAP/reference | 1.29479 | 0.029 |
39DAP/reference | 1.29261 | 0.019 |
41DAP/reference | 1.15372 | 0.06 |
42DAP/reference | 1.24591 | 0.023 |
43DAP/reference | 1.2362 | 0.045 |
47DAP/reference | 0.9603 | 0.286 |
52DAP/reference | 1.07438 | 0.583 |
57DAP/reference | 1.21942 | 0.055 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95268 | 1 |
26DAP/20DAP | 0.95915 | 0.512 |
34DAP/26DAP | 1.00691 | 1 |
51DAP/34DAP | 0.97216 | 0.714 |
52DAP/51DAP | 0.9928 | 1 |
53DAP/52DAP | 0.94763 | 0.854 |
55DAP/53DAP | 0.94558 | 0.796 |
57DAP/55DAP | 1.01615 | 0.986 |
62DAP/57DAP | 1.02123 | 1 |
68DAP/62DAP | 0.93487 | 0.747 |
68DAP/14DAP | 0.83935 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97488 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.4129 | 0.113 |
Mature Green Tomato/Ripe Tomato | 1.07375 | 0.752 |
Immature Eggplant/Mature Eggplant | 1.18674 | 0.239 |
Ripe Pepper/Ripe Tomato | 1.61758 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.64402 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93391 | 0.944 |
1-1-2/M82 | 1.05873 | 1 |
12-2/M82 | 0.93725 | 0.727 |
12-4/M82 | 1.00463 | 1 |
1-3/M82 | 0.98256 | 1 |
2-1-1/M82 | 0.85337 | 0.465 |
2-1/M82 | 1.1698 | 1 |
2-6/M82 | 0.94576 | 1 |
3-2/M82 | 0.99618 | 1 |
4-1-1/M82 | 1.01247 | 1 |
4-1/M82 | 0.90042 | 0.737 |
4-3-2/M82 | 0.79318 | 0.487 |
4-3/M82 | 0.79757 | 0.72 |
5-3/M82 | 0.94721 | 1 |
6-2/M82 | 0.95874 | 1 |
6-3/M82 | 0.99206 | 1 |
7-1/M82 | 1.02178 | 1 |
7-2/M82 | 0.9288 | 0.881 |
9-3-2/M82 | 0.85675 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.07778 | 1 |
IL2-6/WTpooled | 1.20162 | 0.531 |
IL7-5/WTpooled | 1.07974 | |
IL7-3/WTpooled | 0.7935 | 0.298 |
IL12-4/WTpooled | 0.87693 | 0.71 |
IL1-4/WTpooled | 1.32178 | 1 |
WT/WTpooled | 0.93027 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.83556 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05119 | 0.921 |
DC3000/delta hrp 6h | 1.06355 | 1 |
DC3000/delta hrp 12h | 1.03154 | 1 |
DC3000/delta hrp 24h | 1.09608 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21497 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.14231 | 0.311 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.14131 | 1 |
Exp 36h | 1.33328 | 0.693 |
Exp 60h | 1.08057 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9963 | 1 |
Var 0h | 1.41626 | 0.339 |
Var 12h I row2-row1 | 1.10173 | 0.379 |
Var 12h NI row2-row1 | 1.02924 | 1 |
Var 36h I row2-row1 | 0.984 | 1 |
Var 36h NI row2-row1 | 0.93608 | 0.645 |
Var 60h I row2-row1 | 1.07537 | 1 |
Var 60h NI row2-row1 | 1.116 | 0.904 |
Time course 0hI-0hNI | 1.02822 | 0.852 |
Time course 12hI-12hNI | 0.97578 | 0.827 |
Time course 36hI-36hNI | 1.10453 | 0.147 |
Time course 60hI-60hNI | 1.44756 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88696 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 1.09381 | 1 |
transgenic ySAMdc/azygous control (red) | 1.10622 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9391 | 0.077 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.19266 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.8225 | 1 |
Manapal/WT (break) | 1.01891 | 1 |
Manapal/WT (red) | 2.49745 | 0.15 |
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