Expression of 1-1-8.2.12.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.75997 | 0.116 |
27DAP/17DAP | 0.85677 | 0.637 |
39DAP/27DAP | 1.68621 | 0.28 |
41DAP/39DAP | 0.68371 | 0.141 |
42DAP/41DAP | 1.37235 | 0.702 |
43DAP/42DAP | 1.08927 | 1 |
47DAP/43DAP | 0.89982 | 0.663 |
52DAP/47DAP | 1.05359 | 0.964 |
57DAP/52DAP | 1.41845 | 0.55 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.11125 | 0.006 |
17DAP/reference | 1.23464 | 0.306 |
27DAP/reference | 0.83195 | 0.07 |
39DAP/reference | 0.8832 | 0.298 |
41DAP/reference | 0.96528 | 0.667 |
42DAP/reference | 1.23163 | 0.001 |
43DAP/reference | 0.97808 | 0.691 |
47DAP/reference | 1.00525 | 1 |
52DAP/reference | 0.85018 | 0.128 |
57DAP/reference | 1.00287 | 0.805 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90121 | 0.228 |
27DAP/17DAP | 1.03777 | 0.923 |
39DAP/27DAP | 0.9644 | 0.775 |
41DAP/39DAP | 1.38711 | 0.276 |
42DAP/41DAP | 1.03478 | 1 |
43DAP/42DAP | 0.86564 | 0.189 |
47DAP/43DAP | 1.08138 | 0.681 |
52DAP/47DAP | 0.74544 | 0.072 |
57DAP/52DAP | 0.90965 | 0.331 |
57DAP/7DAP | 0.56964 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12388 | 0.691 |
17DAP/reference | 1.05737 | 0.627 |
27DAP/reference | 0.99714 | 0.748 |
39DAP/reference | 0.90764 | 0.17 |
41DAP/reference | 1.14531 | 0.223 |
42DAP/reference | 0.96012 | 0.32 |
43DAP/reference | 0.85442 | 0.037 |
47DAP/reference | 1.2936 | 0.033 |
52DAP/reference | 1.06322 | 0.352 |
57DAP/reference | 1.02978 | 0.966 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25064 | 0.43 |
17DAP/reference | 1.78482 | 0.009 |
27DAP/reference | 1.60646 | 0.014 |
39DAP/reference | 1.39443 | 0.063 |
41DAP/reference | 1.72012 | 0.01 |
42DAP/reference | 1.7863 | 0.012 |
43DAP/reference | 1.18264 | 0.745 |
47DAP/reference | 1.29054 | 0.017 |
52DAP/reference | 0.94787 | 0.302 |
57DAP/reference | 0.85144 | 0.194 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0604 | 0.545 |
17DAP/reference | 1.16842 | 0.522 |
27DAP/reference | 0.99363 | 0.763 |
39DAP/reference | 0.9486 | 0.299 |
41DAP/reference | 1.28302 | 0.01 |
42DAP/reference | 1.19184 | 0.246 |
43DAP/reference | 1.40613 | 0.033 |
47DAP/reference | 0.85325 | 0.168 |
52DAP/reference | 1.05562 | 0.601 |
57DAP/reference | 1.61819 | 0.068 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97091 | 1 |
26DAP/20DAP | 1.47704 | 0.265 |
34DAP/26DAP | 0.9047 | 0.795 |
51DAP/34DAP | 0.65714 | 0.114 |
52DAP/51DAP | 0.74821 | 0.151 |
53DAP/52DAP | 0.92828 | 0.741 |
55DAP/53DAP | 0.78945 | 0.195 |
57DAP/55DAP | 1.57457 | 0.11 |
62DAP/57DAP | 0.95797 | 0.871 |
68DAP/62DAP | 1.89286 | 0.689 |
68DAP/14DAP | 2.87626 | 0.17 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.59914 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.13009 | 0.176 |
Mature Green Tomato/Ripe Tomato | 1.59232 | 0.064 |
Immature Eggplant/Mature Eggplant | 1.28438 | 0.096 |
Ripe Pepper/Ripe Tomato | 1.46439 | 0.258 |
Mature Eggplant/Ripe Tomato | 2.37616 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.82344 | 0.841 |
1-1-2/M82 | 1.08615 | 1 |
12-2/M82 | 0.81723 | 0.862 |
12-4/M82 | 1.10035 | 1 |
1-3/M82 | 2.5513 | 0.479 |
2-1-1/M82 | 1.02484 | 1 |
2-1/M82 | 0.83255 | 0.519 |
2-6/M82 | 0.73334 | 1 |
3-2/M82 | 1.24947 | |
4-1-1/M82 | 1.29783 | 1 |
4-1/M82 | 1.73793 | 1 |
4-3-2/M82 | 1.23532 | 1 |
4-3/M82 | 1.45358 | 0.268 |
5-3/M82 | 1.36535 | 0.467 |
6-2/M82 | 1.59024 | 0.198 |
6-3/M82 | 1.00476 | 1 |
7-1/M82 | 1.14016 | 0.598 |
7-2/M82 | 1.35176 | 0.385 |
9-3-2/M82 | 1.35196 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.96827 | |
IL2-6/WTpooled | 1.21056 | 0.584 |
IL7-5/WTpooled | 1.08186 | 1 |
IL7-3/WTpooled | 0.71583 | 0.298 |
IL12-4/WTpooled | 1.05523 | 1 |
IL1-4/WTpooled | 1.09004 | 1 |
WT/WTpooled | 1.01171 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16169 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10887 | 0.875 |
DC3000/delta hrp 6h | 1.06661 | 1 |
DC3000/delta hrp 12h | 1.18485 | 1 |
DC3000/delta hrp 24h | 1.38315 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05449 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.15897 | 0.363 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99979 | 1 |
Exp 36h | 1.10362 | 1 |
Exp 60h | 1.32033 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96191 | 1 |
Var 0h | 1.01441 | 1 |
Var 12h I row2-row1 | 1.195 | 0.795 |
Var 12h NI row2-row1 | 1.08305 | 1 |
Var 36h I row2-row1 | 1.18835 | 0.298 |
Var 36h NI row2-row1 | 0.82956 | 0.584 |
Var 60h I row2-row1 | 0.92528 | 0.832 |
Var 60h NI row2-row1 | 0.71912 | 0.292 |
Time course 0hI-0hNI | 0.85791 | 0.121 |
Time course 12hI-12hNI | 1.05223 | 0.36 |
Time course 36hI-36hNI | 1.30998 | 0.218 |
Time course 60hI-60hNI | 1.52192 | 0.012 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06043 | 0.541 |
transgenic ySAMdc/azygous control (breaker) | 1.33925 | 1 |
transgenic ySAMdc/azygous control (red) | 1.1576 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.16321 | 0.194 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.69512 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.99746 | 1 |
Manapal/WT (break) | 1.10282 | 1 |
Manapal/WT (red) | 1.06129 | 1 |
|
|