Expression of 1-1-8.2.12.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.759970.116
27DAP/17DAP0.856770.637
39DAP/27DAP1.686210.28
41DAP/39DAP0.683710.141
42DAP/41DAP1.372350.702
43DAP/42DAP1.089271
47DAP/43DAP0.899820.663
52DAP/47DAP1.053590.964
57DAP/52DAP1.418450.55

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.111250.006
17DAP/reference1.234640.306
27DAP/reference0.831950.07
39DAP/reference0.88320.298
41DAP/reference0.965280.667
42DAP/reference1.231630.001
43DAP/reference0.978080.691
47DAP/reference1.005251
52DAP/reference0.850180.128
57DAP/reference1.002870.805

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.901210.228
27DAP/17DAP1.037770.923
39DAP/27DAP0.96440.775
41DAP/39DAP1.387110.276
42DAP/41DAP1.034781
43DAP/42DAP0.865640.189
47DAP/43DAP1.081380.681
52DAP/47DAP0.745440.072
57DAP/52DAP0.909650.331
57DAP/7DAP0.569640.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.123880.691
17DAP/reference1.057370.627
27DAP/reference0.997140.748
39DAP/reference0.907640.17
41DAP/reference1.145310.223
42DAP/reference0.960120.32
43DAP/reference0.854420.037
47DAP/reference1.29360.033
52DAP/reference1.063220.352
57DAP/reference1.029780.966

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.250640.43
17DAP/reference1.784820.009
27DAP/reference1.606460.014
39DAP/reference1.394430.063
41DAP/reference1.720120.01
42DAP/reference1.78630.012
43DAP/reference1.182640.745
47DAP/reference1.290540.017
52DAP/reference0.947870.302
57DAP/reference0.851440.194

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.06040.545
17DAP/reference1.168420.522
27DAP/reference0.993630.763
39DAP/reference0.94860.299
41DAP/reference1.283020.01
42DAP/reference1.191840.246
43DAP/reference1.406130.033
47DAP/reference0.853250.168
52DAP/reference1.055620.601
57DAP/reference1.618190.068

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.970911
26DAP/20DAP1.477040.265
34DAP/26DAP0.90470.795
51DAP/34DAP0.657140.114
52DAP/51DAP0.748210.151
53DAP/52DAP0.928280.741
55DAP/53DAP0.789450.195
57DAP/55DAP1.574570.11
62DAP/57DAP0.957970.871
68DAP/62DAP1.892860.689
68DAP/14DAP2.876260.17

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.599140.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.130090.176
Mature Green Tomato/Ripe Tomato1.592320.064
Immature Eggplant/Mature Eggplant1.284380.096
Ripe Pepper/Ripe Tomato1.464390.258
Mature Eggplant/Ripe Tomato2.376160.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.823440.841
1-1-2/M821.086151
12-2/M820.817230.862
12-4/M821.100351
1-3/M822.55130.479
2-1-1/M821.024841
2-1/M820.832550.519
2-6/M820.733341
3-2/M821.24947
4-1-1/M821.297831
4-1/M821.737931
4-3-2/M821.235321
4-3/M821.453580.268
5-3/M821.365350.467
6-2/M821.590240.198
6-3/M821.004761
7-1/M821.140160.598
7-2/M821.351760.385
9-3-2/M821.351961

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.96827
IL2-6/WTpooled1.210560.584
IL7-5/WTpooled1.081861
IL7-3/WTpooled0.715830.298
IL12-4/WTpooled1.055231
IL1-4/WTpooled1.090041
WT/WTpooled1.011711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.161690.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.108870.875
DC3000/delta hrp 6h1.066611
DC3000/delta hrp 12h1.184851
DC3000/delta hrp 24h1.383150.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.054490.145
DC3000 delta B/DC3000 delta AB1.158970.363

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.999791
Exp 36h1.103621
Exp 60h1.320330.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.961911
Var 0h1.014411
Var 12h I row2-row11.1950.795
Var 12h NI row2-row11.083051
Var 36h I row2-row11.188350.298
Var 36h NI row2-row10.829560.584
Var 60h I row2-row10.925280.832
Var 60h NI row2-row10.719120.292
Time course 0hI-0hNI0.857910.121
Time course 12hI-12hNI1.052230.36
Time course 36hI-36hNI1.309980.218
Time course 60hI-60hNI1.521920.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.060430.541
transgenic ySAMdc/azygous control (breaker)1.339251
transgenic ySAMdc/azygous control (red)1.15760.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.163210.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.695120.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.997461
Manapal/WT (break)1.102821
Manapal/WT (red)1.061291