Expression of 1-1-8.2.13.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09308 | 0.725 |
27DAP/17DAP | 1.06203 | 0.874 |
39DAP/27DAP | 1.069 | 0.906 |
41DAP/39DAP | 0.95513 | 0.807 |
42DAP/41DAP | 0.9351 | 1 |
43DAP/42DAP | 1.03764 | 1 |
47DAP/43DAP | 1.05035 | 0.95 |
52DAP/47DAP | 0.95331 | 0.848 |
57DAP/52DAP | 1.00167 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97648 | 0.465 |
17DAP/reference | 1.08236 | 0.045 |
27DAP/reference | 1.11341 | 0.156 |
39DAP/reference | 1.10559 | 0.125 |
41DAP/reference | 1.10969 | 0.073 |
42DAP/reference | 1.07407 | 0.065 |
43DAP/reference | 0.97592 | 0.728 |
47DAP/reference | 1.08984 | 0.023 |
52DAP/reference | 1.07243 | 0.633 |
57DAP/reference | 1.0396 | 0.927 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05918 | 0.23 |
27DAP/17DAP | 1.04839 | 0.852 |
39DAP/27DAP | 0.95854 | 0.556 |
41DAP/39DAP | 0.90782 | 0.662 |
42DAP/41DAP | 1.00868 | 0.991 |
43DAP/42DAP | 1.03695 | 0.413 |
47DAP/43DAP | 0.96774 | 0.617 |
52DAP/47DAP | 0.95288 | 0.634 |
57DAP/52DAP | 1.02926 | 0.851 |
57DAP/7DAP | 0.97236 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11664 | 0.368 |
17DAP/reference | 1.39927 | 0.02 |
27DAP/reference | 1.3785 | 0.02 |
39DAP/reference | 1.73399 | 0.006 |
41DAP/reference | 1.795 | 0.015 |
42DAP/reference | 1.79812 | 0.01 |
43DAP/reference | 2.16219 | 0.007 |
47DAP/reference | 1.41852 | 0.224 |
52DAP/reference | 1.62095 | 0.008 |
57DAP/reference | 1.62151 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94774 | 0.238 |
17DAP/reference | 1.04491 | 0.904 |
27DAP/reference | 0.98282 | 0.554 |
39DAP/reference | 0.94945 | 0.235 |
41DAP/reference | 1.00301 | 0.666 |
42DAP/reference | 1.02572 | 1 |
43DAP/reference | 0.97639 | 0.607 |
47DAP/reference | 1.11079 | 0.247 |
52DAP/reference | 0.94901 | 0.047 |
57DAP/reference | 0.9992 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23149 | 0.112 |
17DAP/reference | 1.18519 | 0.456 |
27DAP/reference | 1.75579 | 0.023 |
39DAP/reference | 1.42373 | 0.025 |
41DAP/reference | 1.34967 | 0.065 |
42DAP/reference | 1.31647 | 0.103 |
43DAP/reference | 1.22763 | 0.205 |
47DAP/reference | 1.10749 | 0.014 |
52DAP/reference | 1.76222 | 0.052 |
57DAP/reference | 1.28545 | 0.298 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05305 | 0.878 |
26DAP/20DAP | 1.11189 | 0.53 |
34DAP/26DAP | 1.05738 | 1 |
51DAP/34DAP | 1.04027 | 0.84 |
52DAP/51DAP | 1.07019 | 0.662 |
53DAP/52DAP | 1.01487 | 1 |
55DAP/53DAP | 1.01746 | 0.994 |
57DAP/55DAP | 0.89429 | 0.443 |
62DAP/57DAP | 0.98233 | 0.994 |
68DAP/62DAP | 1.21429 | 0.448 |
68DAP/14DAP | 1.19266 | 0.469 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0294 | 0.7 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.06631 | 1 |
Mature Green Tomato/Ripe Tomato | 0.95407 | 0.611 |
Immature Eggplant/Mature Eggplant | 1.02062 | 0.554 |
Ripe Pepper/Ripe Tomato | 0.23963 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.26066 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.91723 | 0.944 |
1-1-2/M82 | 1.06504 | 1 |
12-2/M82 | 0.94937 | 0.955 |
12-4/M82 | 1.02332 | 1 |
1-3/M82 | 0.97637 | 0.441 |
2-1-1/M82 | 0.91044 | 0.683 |
2-1/M82 | 1.01105 | 1 |
2-6/M82 | 0.93252 | 1 |
3-2/M82 | 0.96833 | 1 |
4-1-1/M82 | 1.01504 | 1 |
4-1/M82 | 0.90665 | 1 |
4-3-2/M82 | 0.84943 | 0.698 |
4-3/M82 | 1.01882 | 1 |
5-3/M82 | 0.94363 | 1 |
6-2/M82 | 0.96855 | 1 |
6-3/M82 | 1.0001 | 1 |
7-1/M82 | 0.95943 | 0.803 |
7-2/M82 | 0.91181 | 0.796 |
9-3-2/M82 | 0.96135 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.09906 | 0.531 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.04567 | 1 |
IL12-4/WTpooled | 1.05346 | 0.891 |
IL1-4/WTpooled | 0.93074 | |
WT/WTpooled | 0.93946 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1681 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03567 | 0.921 |
DC3000/delta hrp 6h | 0.95468 | 0.95 |
DC3000/delta hrp 12h | 1.02242 | 1 |
DC3000/delta hrp 24h | 1.01387 | 0.779 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21451 | 0.063 |
DC3000 delta B/DC3000 delta AB | 1.24244 | 0.144 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97746 | 1 |
Exp 36h | 0.6562 | 0.434 |
Exp 60h | 0.87443 | 0.258 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97703 | 1 |
Var 0h | 0.58844 | 0.98 |
Var 12h I row2-row1 | 1.20748 | 0.209 |
Var 12h NI row2-row1 | 0.99602 | 1 |
Var 36h I row2-row1 | 1.01746 | 1 |
Var 36h NI row2-row1 | 1.03957 | 1 |
Var 60h I row2-row1 | 1.06938 | 1 |
Var 60h NI row2-row1 | 1.14118 | 0.904 |
Time course 0hI-0hNI | 1.01963 | 1 |
Time course 12hI-12hNI | 1.00408 | 1 |
Time course 36hI-36hNI | 1.0166 | 0.975 |
Time course 60hI-60hNI | 1.70882 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.079 | 0.397 |
transgenic ySAMdc/azygous control (breaker) | 0.7341 | 0.139 |
transgenic ySAMdc/azygous control (red) | 1.04389 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0106 | 0.723 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.68934 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.47237 | 0.172 |
Manapal/WT (break) | 1.04565 | 1 |
Manapal/WT (red) | 0.8763 | 0.274 |
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