Expression of 1-1-8.2.13.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.093080.725
27DAP/17DAP1.062030.874
39DAP/27DAP1.0690.906
41DAP/39DAP0.955130.807
42DAP/41DAP0.93511
43DAP/42DAP1.037641
47DAP/43DAP1.050350.95
52DAP/47DAP0.953310.848
57DAP/52DAP1.001670.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.976480.465
17DAP/reference1.082360.045
27DAP/reference1.113410.156
39DAP/reference1.105590.125
41DAP/reference1.109690.073
42DAP/reference1.074070.065
43DAP/reference0.975920.728
47DAP/reference1.089840.023
52DAP/reference1.072430.633
57DAP/reference1.03960.927

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.059180.23
27DAP/17DAP1.048390.852
39DAP/27DAP0.958540.556
41DAP/39DAP0.907820.662
42DAP/41DAP1.008680.991
43DAP/42DAP1.036950.413
47DAP/43DAP0.967740.617
52DAP/47DAP0.952880.634
57DAP/52DAP1.029260.851
57DAP/7DAP0.972361

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.116640.368
17DAP/reference1.399270.02
27DAP/reference1.37850.02
39DAP/reference1.733990.006
41DAP/reference1.7950.015
42DAP/reference1.798120.01
43DAP/reference2.162190.007
47DAP/reference1.418520.224
52DAP/reference1.620950.008
57DAP/reference1.621510.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.947740.238
17DAP/reference1.044910.904
27DAP/reference0.982820.554
39DAP/reference0.949450.235
41DAP/reference1.003010.666
42DAP/reference1.025721
43DAP/reference0.976390.607
47DAP/reference1.110790.247
52DAP/reference0.949010.047
57DAP/reference0.99920.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.231490.112
17DAP/reference1.185190.456
27DAP/reference1.755790.023
39DAP/reference1.423730.025
41DAP/reference1.349670.065
42DAP/reference1.316470.103
43DAP/reference1.227630.205
47DAP/reference1.107490.014
52DAP/reference1.762220.052
57DAP/reference1.285450.298

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.053050.878
26DAP/20DAP1.111890.53
34DAP/26DAP1.057381
51DAP/34DAP1.040270.84
52DAP/51DAP1.070190.662
53DAP/52DAP1.014871
55DAP/53DAP1.017460.994
57DAP/55DAP0.894290.443
62DAP/57DAP0.982330.994
68DAP/62DAP1.214290.448
68DAP/14DAP1.192660.469

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.02940.7

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.066311
Mature Green Tomato/Ripe Tomato0.954070.611
Immature Eggplant/Mature Eggplant1.020620.554
Ripe Pepper/Ripe Tomato0.239630.224
Mature Eggplant/Ripe Tomato0.260660.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.917230.944
1-1-2/M821.065041
12-2/M820.949370.955
12-4/M821.023321
1-3/M820.976370.441
2-1-1/M820.910440.683
2-1/M821.011051
2-6/M820.932521
3-2/M820.968331
4-1-1/M821.015041
4-1/M820.906651
4-3-2/M820.849430.698
4-3/M821.018821
5-3/M820.943631
6-2/M820.968551
6-3/M821.00011
7-1/M820.959430.803
7-2/M820.911810.796
9-3-2/M820.961351

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.099060.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.045671
IL12-4/WTpooled1.053460.891
IL1-4/WTpooled0.93074
WT/WTpooled0.939461

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.16810.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.035670.921
DC3000/delta hrp 6h0.954680.95
DC3000/delta hrp 12h1.022421
DC3000/delta hrp 24h1.013870.779

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.214510.063
DC3000 delta B/DC3000 delta AB1.242440.144

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.977461
Exp 36h0.65620.434
Exp 60h0.874430.258

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977031
Var 0h0.588440.98
Var 12h I row2-row11.207480.209
Var 12h NI row2-row10.996021
Var 36h I row2-row11.017461
Var 36h NI row2-row11.039571
Var 60h I row2-row11.069381
Var 60h NI row2-row11.141180.904
Time course 0hI-0hNI1.019631
Time course 12hI-12hNI1.004081
Time course 36hI-36hNI1.01660.975
Time course 60hI-60hNI1.708820.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.0790.397
transgenic ySAMdc/azygous control (breaker)0.73410.139
transgenic ySAMdc/azygous control (red)1.043890.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.01060.723

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.689340.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.472370.172
Manapal/WT (break)1.045651
Manapal/WT (red)0.87630.274