Expression of 1-1-8.2.14.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.822310.265
27DAP/17DAP0.912070.8
39DAP/27DAP1.366420.256
41DAP/39DAP0.733840.169
42DAP/41DAP1.372140.719
43DAP/42DAP0.924070.877
47DAP/43DAP0.795360.395
52DAP/47DAP0.697920.297
57DAP/52DAP1.475850.677

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.545920.013
17DAP/reference1.000990.858
27DAP/reference0.888810.314
39DAP/reference0.918760.324
41DAP/reference0.771130.014
42DAP/reference1.131770.151
43DAP/reference1.030641
47DAP/reference1.072490.353
52DAP/reference0.869230.23
57DAP/reference1.202940.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.925620.484
27DAP/17DAP1.008761
39DAP/27DAP0.901090.181
41DAP/39DAP1.243550.612
42DAP/41DAP1.102080.495
43DAP/42DAP0.748850.022
47DAP/43DAP1.129030.144
52DAP/47DAP0.764750.108
57DAP/52DAP0.92190.507
57DAP/7DAP0.637231

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.981550.024
17DAP/reference1.82120.016
27DAP/reference1.969360.006
39DAP/reference2.124030.005
41DAP/reference2.195220.01
42DAP/reference2.507370.006
43DAP/reference2.239020.006
47DAP/reference1.557140.036
52DAP/reference2.039230.007
57DAP/reference1.771380.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.407280.12
17DAP/reference1.380790.015
27DAP/reference1.229990.131
39DAP/reference1.189120.044
41DAP/reference1.019341
42DAP/reference1.217680.086
43DAP/reference0.744410.072
47DAP/reference1.303840.012
52DAP/reference0.854570.02
57DAP/reference1.106730.609

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.770720.018
17DAP/reference1.356680.261
27DAP/reference1.613790.02
39DAP/reference1.653320.011
41DAP/reference1.564460.045
42DAP/reference1.696980.011
43DAP/reference1.778630.013
47DAP/reference1.016220.708
52DAP/reference1.862750.033
57DAP/reference1.310380.25

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.218640.966
26DAP/20DAP1.288980.453
34DAP/26DAP0.98470.97
51DAP/34DAP0.529790.061
52DAP/51DAP0.815051
53DAP/52DAP0.838540.336
55DAP/53DAP0.794440.149
57DAP/55DAP1.666640.311
62DAP/57DAP1.270910.622
68DAP/62DAP1.277290.573
68DAP/14DAP0.919741

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.893390.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.050050.666
Mature Green Tomato/Ripe Tomato1.666890.299
Immature Eggplant/Mature Eggplant1.321440.181
Ripe Pepper/Ripe Tomato1.28730.258
Mature Eggplant/Ripe Tomato2.252470.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.833740.605
1-1-2/M821.225361
12-2/M820.809550.955
12-4/M820.815250.619
1-3/M821.742310.248
2-1-1/M821.024641
2-1/M820.847010.519
2-6/M820.950461
3-2/M821.17257
4-1-1/M821.184141
4-1/M821.065581
4-3-2/M821.593470.284
4-3/M821.453430.268
5-3/M821.289230.572
6-2/M821.12880.253
6-3/M821.066171
7-1/M820.936521
7-2/M821.282850.385
9-3-2/M821.194471

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.24650.277
IL2-6/WTpooled1.269410.419
IL7-5/WTpooled0.970131
IL7-3/WTpooled0.667830.294
IL12-4/WTpooled0.848270.71
IL1-4/WTpooled1.014121
WT/WTpooled1.003281

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.960321

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.106740.692
DC3000/delta hrp 6h1.03761
DC3000/delta hrp 12h0.82431
DC3000/delta hrp 24h1.125360.271

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.951620.568
DC3000 delta B/DC3000 delta AB1.238960.212

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.848531
Exp 36h1.164241
Exp 60h1.117261

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.993591
Var 0h0.78780.457
Var 12h I row2-row11.019571
Var 12h NI row2-row11.113531
Var 36h I row2-row11.178820.298
Var 36h NI row2-row10.765930.478
Var 60h I row2-row10.962720.952
Var 60h NI row2-row10.771730.313
Time course 0hI-0hNI0.870070.116
Time course 12hI-12hNI1.070060.321
Time course 36hI-36hNI1.314520.248
Time course 60hI-60hNI1.695270.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.967490.614
transgenic ySAMdc/azygous control (breaker)1.844950.248
transgenic ySAMdc/azygous control (red)1.380170.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.312010.066

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.556340.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.860681
Manapal/WT (break)1.048351
Manapal/WT (red)1.164770.413