Expression of 1-1-8.2.14.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82231 | 0.265 |
27DAP/17DAP | 0.91207 | 0.8 |
39DAP/27DAP | 1.36642 | 0.256 |
41DAP/39DAP | 0.73384 | 0.169 |
42DAP/41DAP | 1.37214 | 0.719 |
43DAP/42DAP | 0.92407 | 0.877 |
47DAP/43DAP | 0.79536 | 0.395 |
52DAP/47DAP | 0.69792 | 0.297 |
57DAP/52DAP | 1.47585 | 0.677 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54592 | 0.013 |
17DAP/reference | 1.00099 | 0.858 |
27DAP/reference | 0.88881 | 0.314 |
39DAP/reference | 0.91876 | 0.324 |
41DAP/reference | 0.77113 | 0.014 |
42DAP/reference | 1.13177 | 0.151 |
43DAP/reference | 1.03064 | 1 |
47DAP/reference | 1.07249 | 0.353 |
52DAP/reference | 0.86923 | 0.23 |
57DAP/reference | 1.20294 | 0.019 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92562 | 0.484 |
27DAP/17DAP | 1.00876 | 1 |
39DAP/27DAP | 0.90109 | 0.181 |
41DAP/39DAP | 1.24355 | 0.612 |
42DAP/41DAP | 1.10208 | 0.495 |
43DAP/42DAP | 0.74885 | 0.022 |
47DAP/43DAP | 1.12903 | 0.144 |
52DAP/47DAP | 0.76475 | 0.108 |
57DAP/52DAP | 0.9219 | 0.507 |
57DAP/7DAP | 0.63723 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.98155 | 0.024 |
17DAP/reference | 1.8212 | 0.016 |
27DAP/reference | 1.96936 | 0.006 |
39DAP/reference | 2.12403 | 0.005 |
41DAP/reference | 2.19522 | 0.01 |
42DAP/reference | 2.50737 | 0.006 |
43DAP/reference | 2.23902 | 0.006 |
47DAP/reference | 1.55714 | 0.036 |
52DAP/reference | 2.03923 | 0.007 |
57DAP/reference | 1.77138 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40728 | 0.12 |
17DAP/reference | 1.38079 | 0.015 |
27DAP/reference | 1.22999 | 0.131 |
39DAP/reference | 1.18912 | 0.044 |
41DAP/reference | 1.01934 | 1 |
42DAP/reference | 1.21768 | 0.086 |
43DAP/reference | 0.74441 | 0.072 |
47DAP/reference | 1.30384 | 0.012 |
52DAP/reference | 0.85457 | 0.02 |
57DAP/reference | 1.10673 | 0.609 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.77072 | 0.018 |
17DAP/reference | 1.35668 | 0.261 |
27DAP/reference | 1.61379 | 0.02 |
39DAP/reference | 1.65332 | 0.011 |
41DAP/reference | 1.56446 | 0.045 |
42DAP/reference | 1.69698 | 0.011 |
43DAP/reference | 1.77863 | 0.013 |
47DAP/reference | 1.01622 | 0.708 |
52DAP/reference | 1.86275 | 0.033 |
57DAP/reference | 1.31038 | 0.25 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.21864 | 0.966 |
26DAP/20DAP | 1.28898 | 0.453 |
34DAP/26DAP | 0.9847 | 0.97 |
51DAP/34DAP | 0.52979 | 0.061 |
52DAP/51DAP | 0.81505 | 1 |
53DAP/52DAP | 0.83854 | 0.336 |
55DAP/53DAP | 0.79444 | 0.149 |
57DAP/55DAP | 1.66664 | 0.311 |
62DAP/57DAP | 1.27091 | 0.622 |
68DAP/62DAP | 1.27729 | 0.573 |
68DAP/14DAP | 0.91974 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.89339 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.05005 | 0.666 |
Mature Green Tomato/Ripe Tomato | 1.66689 | 0.299 |
Immature Eggplant/Mature Eggplant | 1.32144 | 0.181 |
Ripe Pepper/Ripe Tomato | 1.2873 | 0.258 |
Mature Eggplant/Ripe Tomato | 2.25247 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.83374 | 0.605 |
1-1-2/M82 | 1.22536 | 1 |
12-2/M82 | 0.80955 | 0.955 |
12-4/M82 | 0.81525 | 0.619 |
1-3/M82 | 1.74231 | 0.248 |
2-1-1/M82 | 1.02464 | 1 |
2-1/M82 | 0.84701 | 0.519 |
2-6/M82 | 0.95046 | 1 |
3-2/M82 | 1.17257 | |
4-1-1/M82 | 1.18414 | 1 |
4-1/M82 | 1.06558 | 1 |
4-3-2/M82 | 1.59347 | 0.284 |
4-3/M82 | 1.45343 | 0.268 |
5-3/M82 | 1.28923 | 0.572 |
6-2/M82 | 1.1288 | 0.253 |
6-3/M82 | 1.06617 | 1 |
7-1/M82 | 0.93652 | 1 |
7-2/M82 | 1.28285 | 0.385 |
9-3-2/M82 | 1.19447 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.2465 | 0.277 |
IL2-6/WTpooled | 1.26941 | 0.419 |
IL7-5/WTpooled | 0.97013 | 1 |
IL7-3/WTpooled | 0.66783 | 0.294 |
IL12-4/WTpooled | 0.84827 | 0.71 |
IL1-4/WTpooled | 1.01412 | 1 |
WT/WTpooled | 1.00328 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96032 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10674 | 0.692 |
DC3000/delta hrp 6h | 1.0376 | 1 |
DC3000/delta hrp 12h | 0.8243 | 1 |
DC3000/delta hrp 24h | 1.12536 | 0.271 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.95162 | 0.568 |
DC3000 delta B/DC3000 delta AB | 1.23896 | 0.212 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.84853 | 1 |
Exp 36h | 1.16424 | 1 |
Exp 60h | 1.11726 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99359 | 1 |
Var 0h | 0.7878 | 0.457 |
Var 12h I row2-row1 | 1.01957 | 1 |
Var 12h NI row2-row1 | 1.11353 | 1 |
Var 36h I row2-row1 | 1.17882 | 0.298 |
Var 36h NI row2-row1 | 0.76593 | 0.478 |
Var 60h I row2-row1 | 0.96272 | 0.952 |
Var 60h NI row2-row1 | 0.77173 | 0.313 |
Time course 0hI-0hNI | 0.87007 | 0.116 |
Time course 12hI-12hNI | 1.07006 | 0.321 |
Time course 36hI-36hNI | 1.31452 | 0.248 |
Time course 60hI-60hNI | 1.69527 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96749 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 1.84495 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.38017 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.31201 | 0.066 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.55634 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86068 | 1 |
Manapal/WT (break) | 1.04835 | 1 |
Manapal/WT (red) | 1.16477 | 0.413 |
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