Expression of 1-1-8.2.14.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17282 | 0.534 |
27DAP/17DAP | 1.44641 | 0.532 |
39DAP/27DAP | 1.29997 | 0.329 |
41DAP/39DAP | 0.63978 | 0.066 |
42DAP/41DAP | 1.02375 | 0.994 |
43DAP/42DAP | 1.03031 | 1 |
47DAP/43DAP | 1.08476 | 0.926 |
52DAP/47DAP | 0.84691 | 0.598 |
57DAP/52DAP | 1.15719 | 0.941 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35402 | 0.071 |
17DAP/reference | 1.36239 | 0.021 |
27DAP/reference | 0.91871 | 0.349 |
39DAP/reference | 1.24779 | 0.07 |
41DAP/reference | 1.42627 | 0.023 |
42DAP/reference | 1.35989 | 0.002 |
43DAP/reference | 1.08816 | 0.471 |
47DAP/reference | 1.23838 | 0.008 |
52DAP/reference | 1.22305 | 0.388 |
57DAP/reference | 0.96296 | 0.456 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15083 | 0.258 |
27DAP/17DAP | 0.99507 | 0.969 |
39DAP/27DAP | 0.98837 | 0.953 |
41DAP/39DAP | 1.04448 | 0.807 |
42DAP/41DAP | 0.98383 | 0.819 |
43DAP/42DAP | 0.82014 | 0.058 |
47DAP/43DAP | 1.04293 | 0.65 |
52DAP/47DAP | 0.90566 | 0.572 |
57DAP/52DAP | 0.87685 | 0.264 |
57DAP/7DAP | 0.96227 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.58755 | 0.025 |
17DAP/reference | 1.98204 | 0.007 |
27DAP/reference | 1.63329 | 0.008 |
39DAP/reference | 1.30595 | 0.013 |
41DAP/reference | 1.61153 | 0.012 |
42DAP/reference | 1.18665 | 0.014 |
43DAP/reference | 1.32777 | 0.023 |
47DAP/reference | 1.65265 | 0.014 |
52DAP/reference | 1.55664 | 0.017 |
57DAP/reference | 0.99299 | 0.569 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33497 | 0.057 |
17DAP/reference | 1.60408 | 0.008 |
27DAP/reference | 1.27584 | 0.087 |
39DAP/reference | 1.07529 | 0.514 |
41DAP/reference | 1.45674 | 0.005 |
42DAP/reference | 1.46016 | 0.01 |
43DAP/reference | 1.44527 | 0.159 |
47DAP/reference | 1.41075 | 0.009 |
52DAP/reference | 1.44679 | 0.006 |
57DAP/reference | 1.49662 | 0.055 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.03013 | 0.019 |
17DAP/reference | 1.55845 | 0.217 |
27DAP/reference | 1.52822 | 0.02 |
39DAP/reference | 1.6302 | 0.005 |
41DAP/reference | 1.1911 | 0.039 |
42DAP/reference | 1.17709 | 0.258 |
43DAP/reference | 1.4281 | 0.012 |
47DAP/reference | 1.5045 | 0.022 |
52DAP/reference | 1.42185 | 0.044 |
57DAP/reference | 1.35418 | 0.01 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.87636 | 0.841 |
26DAP/20DAP | 1.1395 | 0.77 |
34DAP/26DAP | 0.99358 | 1 |
51DAP/34DAP | 0.75215 | 0.078 |
52DAP/51DAP | 0.95098 | 1 |
53DAP/52DAP | 0.87168 | 0.35 |
55DAP/53DAP | 1.12898 | 0.614 |
57DAP/55DAP | 1.28126 | 0.559 |
62DAP/57DAP | 1.05642 | 1 |
68DAP/62DAP | 0.76886 | 0.406 |
68DAP/14DAP | 0.65843 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.78389 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.90803 | 0.089 |
Mature Green Tomato/Ripe Tomato | 1.88813 | 0.023 |
Immature Eggplant/Mature Eggplant | 0.9046 | |
Ripe Pepper/Ripe Tomato | 0.62382 | |
Mature Eggplant/Ripe Tomato | 1.58555 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.2425 | |
4-3-2/M82 | 1.32689 | 0.241 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.15376 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.0072 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.59789 | 0.277 |
IL2-6/WTpooled | 1.20353 | 0.415 |
IL7-5/WTpooled | 1.26524 | 1 |
IL7-3/WTpooled | 0.94828 | 1 |
IL12-4/WTpooled | 1.27904 | 0.673 |
IL1-4/WTpooled | 1.17377 | 1 |
WT/WTpooled | 1.00385 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91037 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 0.97886 | 0.95 |
DC3000/delta hrp 12h | 1.09229 | 1 |
DC3000/delta hrp 24h | 0.83485 | 0.503 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.98549 | 0.961 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.03743 | 1 |
Exp 36h | 0.78246 | 0.589 |
Exp 60h | 0.86267 | 0.32 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00516 | 1 |
Var 0h | 0.75757 | 1 |
Var 12h I row2-row1 | 0.90923 | 0.565 |
Var 12h NI row2-row1 | 1.00864 | 1 |
Var 36h I row2-row1 | 1.15853 | 0.339 |
Var 36h NI row2-row1 | 1.12347 | 1 |
Var 60h I row2-row1 | 1.00947 | 1 |
Var 60h NI row2-row1 | 0.90494 | 0.818 |
Time course 0hI-0hNI | 1.00947 | 1 |
Time course 12hI-12hNI | 1.02796 | 0.811 |
Time course 36hI-36hNI | 1.10966 | 0.035 |
Time course 60hI-60hNI | 0.73258 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93417 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 0.95781 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.91229 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.892 | 0.431 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.07512 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.8628 | 0.105 |
Manapal/WT (break) | 2.36804 | 0.123 |
Manapal/WT (red) | 0.43018 | 1 |
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