Expression of 1-1-8.2.14.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.093650.964
27DAP/17DAP1.434660.746
39DAP/27DAP0.999580.84
41DAP/39DAP1.20360.78
42DAP/41DAP1.172290.876
43DAP/42DAP0.993430.937
47DAP/43DAP0.863370.565
52DAP/47DAP1.412860.487
57DAP/52DAP0.826640.839

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.20930.207
17DAP/reference1.422990.048
27DAP/reference1.377070.038
39DAP/reference1.125320.679
41DAP/reference1.693130.013
42DAP/reference1.569960.001
43DAP/reference1.166520.495
47DAP/reference1.283520.001
52DAP/reference1.298630.031
57DAP/reference0.935290.294

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.561760.036
27DAP/17DAP0.955010.821
39DAP/27DAP1.191280.359
41DAP/39DAP0.871770.384
42DAP/41DAP1.119520.559
43DAP/42DAP2.11040.014
47DAP/43DAP1.04250.934
52DAP/47DAP1.766340.088
57DAP/52DAP3.704560.037
57DAP/7DAP2.87510.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.079830.501
17DAP/reference0.873850.22
27DAP/reference0.846990.014
39DAP/reference1.313650.282
41DAP/reference0.755790.035
42DAP/reference0.88970.262
43DAP/reference1.468050.039
47DAP/reference1.107180.761
52DAP/reference0.948780.363
57DAP/reference1.267370.049

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.344910.246
17DAP/reference1.633660.03
27DAP/reference1.349510.051
39DAP/reference1.344140.324
41DAP/reference1.329520.035
42DAP/reference1.287340.157
43DAP/reference1.572920.242
47DAP/reference1.570730.016
52DAP/reference1.517290.069
57DAP/reference1.072310.705

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.075790.827
17DAP/reference0.983380.727
27DAP/reference0.874970.119
39DAP/reference0.943020.36
41DAP/reference0.763960.086
42DAP/reference1.068381
43DAP/reference1.053680.779
47DAP/reference1.116870.61
52DAP/reference1.519880.457
57DAP/reference1.256420.138

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.981
26DAP/20DAP1.009041
34DAP/26DAP1.013421
51DAP/34DAP2.357360.032
52DAP/51DAP0.962731
53DAP/52DAP1.124830.58
55DAP/53DAP0.732450.026
57DAP/55DAP1.416460.969
62DAP/57DAP1.172020.8
68DAP/62DAP0.715770.505
68DAP/14DAP1.169130.328

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.714720.023

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.247490.073
Mature Green Tomato/Ripe Tomato0.142490.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.66310.224
Mature Eggplant/Ripe Tomato0.078360.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.823620.512
1-1-2/M821.284131
12-2/M821.43060.421
12-4/M820.786970.262
1-3/M822.25262
2-1-1/M821.098391
2-1/M820.899091
2-6/M820.85257
3-2/M821.00547
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.358631
4-3/M820.938531
5-3/M820.977210.642
6-2/M824.691311
6-3/M820.996621
7-1/M821.198381
7-2/M821.24843
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.870740.321
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.18425
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.008221

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.859880.512
DC3000/delta hrp 6h1.163171
DC3000/delta hrp 12h1.117841
DC3000/delta hrp 24h0.602790.04

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.587640.025
DC3000 delta B/DC3000 delta AB0.67220.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.866671
Exp 36h0.741210.539
Exp 60h0.818130.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.017841
Var 0h1.093950.289
Var 12h I row2-row10.772430.338
Var 12h NI row2-row11.028581
Var 36h I row2-row10.889761
Var 36h NI row2-row11.294070.276
Var 60h I row2-row11.088880.543
Var 60h NI row2-row11.187680.904
Time course 0hI-0hNI1.068970.719
Time course 12hI-12hNI0.996831
Time course 36hI-36hNI0.99710.753
Time course 60hI-60hNI0.256130.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.997780.931
transgenic ySAMdc/azygous control (breaker)0.748830.251
transgenic ySAMdc/azygous control (red)0.914491

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.987740.651

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.082861

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.485310.083
Manapal/WT (break)1.466660.14
Manapal/WT (red)2.966950.137