Expression of 1-1-8.2.15.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08239 | 0.893 |
27DAP/17DAP | 1.15621 | 0.871 |
39DAP/27DAP | 0.73866 | 0.449 |
41DAP/39DAP | 1.73799 | 0.266 |
42DAP/41DAP | 1.02844 | 1 |
43DAP/42DAP | 1.09175 | 0.937 |
47DAP/43DAP | 1.02919 | 1 |
52DAP/47DAP | 1.24959 | 0.676 |
57DAP/52DAP | 0.88754 | 0.89 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29808 | 0.132 |
17DAP/reference | 1.20477 | 0.038 |
27DAP/reference | 1.0187 | 0.904 |
39DAP/reference | 1.1521 | 0.114 |
41DAP/reference | 1.13647 | 0.036 |
42DAP/reference | 0.90361 | 0.072 |
43DAP/reference | 1.11916 | 0.118 |
47DAP/reference | 0.80065 | 0.116 |
52DAP/reference | 0.91957 | 0.06 |
57DAP/reference | 0.92036 | 0.248 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9632 | 0.732 |
27DAP/17DAP | 1.01268 | 0.976 |
39DAP/27DAP | 1.03849 | 0.698 |
41DAP/39DAP | 1.05171 | 0.849 |
42DAP/41DAP | 1.03393 | 0.872 |
43DAP/42DAP | 1.03226 | 0.788 |
47DAP/43DAP | 1.03165 | 0.88 |
52DAP/47DAP | 1.01713 | 0.965 |
57DAP/52DAP | 1.07478 | 0.584 |
57DAP/7DAP | 1.00557 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96743 | 0.296 |
17DAP/reference | 0.93947 | 0.094 |
27DAP/reference | 0.92166 | 0.014 |
39DAP/reference | 0.93291 | 0.014 |
41DAP/reference | 0.88736 | 0.067 |
42DAP/reference | 0.85161 | 0.01 |
43DAP/reference | 0.8532 | 0.064 |
47DAP/reference | 0.85076 | 0.101 |
52DAP/reference | 0.89001 | 0.066 |
57DAP/reference | 0.83888 | 0.031 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93957 | 0.518 |
17DAP/reference | 1.16265 | 0.257 |
27DAP/reference | 1.17422 | 0.212 |
39DAP/reference | 1.26782 | 0.043 |
41DAP/reference | 1.01378 | 0.531 |
42DAP/reference | 0.97637 | 0.482 |
43DAP/reference | 1.32905 | 0.112 |
47DAP/reference | 0.94794 | 0.292 |
52DAP/reference | 1.21563 | 0.181 |
57DAP/reference | 1.08022 | 0.786 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12886 | 0.027 |
17DAP/reference | 1.02183 | 0.602 |
27DAP/reference | 0.94501 | 0.055 |
39DAP/reference | 0.95718 | 0.271 |
41DAP/reference | 0.96505 | 0.167 |
42DAP/reference | 1.00993 | 1 |
43DAP/reference | 1.02671 | 1 |
47DAP/reference | 1.14996 | 0.562 |
52DAP/reference | 0.79629 | 0.068 |
57DAP/reference | 0.86992 | 0.12 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94016 | 1 |
26DAP/20DAP | 0.99078 | 1 |
34DAP/26DAP | 1.17185 | 0.542 |
51DAP/34DAP | 0.875 | 0.205 |
52DAP/51DAP | 1.1214 | 0.288 |
53DAP/52DAP | 0.98668 | 0.978 |
55DAP/53DAP | 1.1456 | 0.234 |
57DAP/55DAP | 0.97324 | 0.855 |
62DAP/57DAP | 1.10299 | 1 |
68DAP/62DAP | 0.83849 | 0.579 |
68DAP/14DAP | 1.52937 | 0.676 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.80923 | 0.057 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.19463 | 0.267 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.40919 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10137 | 0.877 |
1-1-2/M82 | 0.79165 | 1 |
12-2/M82 | 0.94357 | |
12-4/M82 | 0.80173 | 1 |
1-3/M82 | 0.72689 | 0.378 |
2-1-1/M82 | 0.90858 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.32445 | 0.594 |
3-2/M82 | 0.87326 | 1 |
4-1-1/M82 | 1.11512 | 1 |
4-1/M82 | 0.69962 | 0.665 |
4-3-2/M82 | 0.67214 | 0.698 |
4-3/M82 | 1.4408 | 1 |
5-3/M82 | 1.06192 | 1 |
6-2/M82 | 0.64296 | |
6-3/M82 | 0.97198 | 1 |
7-1/M82 | 0.82686 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.78183 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.92541 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.97682 | 1 |
IL12-4/WTpooled | 0.71745 | 0.71 |
IL1-4/WTpooled | 0.93817 | 1 |
WT/WTpooled | 1.11169 | 0.957 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.27067 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02165 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.99643 | 1 |
DC3000/delta hrp 24h | 1.07057 | 0.582 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12972 | 0.27 |
DC3000 delta B/DC3000 delta AB | 1.23276 | 0.204 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98548 | 1 |
Exp 36h | 1.84428 | 0.693 |
Exp 60h | 1.78649 | 0.215 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03172 | 1 |
Var 0h | 0.88972 | 0.933 |
Var 12h I row2-row1 | 1.0846 | 0.692 |
Var 12h NI row2-row1 | 1.03989 | 1 |
Var 36h I row2-row1 | 0.92272 | 1 |
Var 36h NI row2-row1 | 1.01704 | 1 |
Var 60h I row2-row1 | 1.19754 | 0.562 |
Var 60h NI row2-row1 | 1.13155 | 0.904 |
Time course 0hI-0hNI | 1.03738 | 0.852 |
Time course 12hI-12hNI | 1.06016 | 0.544 |
Time course 36hI-36hNI | 0.98108 | 0.58 |
Time course 60hI-60hNI | 1.3821 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.12368 | 0.384 |
transgenic ySAMdc/azygous control (breaker) | 1.07063 | 1 |
transgenic ySAMdc/azygous control (red) | 1.12308 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97816 | 0.242 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87096 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.70561 | 0.172 |
Manapal/WT (break) | 0.90796 | 1 |
Manapal/WT (red) | 0.84941 | 0.181 |
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