Expression of 1-1-8.2.15.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.082390.893
27DAP/17DAP1.156210.871
39DAP/27DAP0.738660.449
41DAP/39DAP1.737990.266
42DAP/41DAP1.028441
43DAP/42DAP1.091750.937
47DAP/43DAP1.029191
52DAP/47DAP1.249590.676
57DAP/52DAP0.887540.89

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.298080.132
17DAP/reference1.204770.038
27DAP/reference1.01870.904
39DAP/reference1.15210.114
41DAP/reference1.136470.036
42DAP/reference0.903610.072
43DAP/reference1.119160.118
47DAP/reference0.800650.116
52DAP/reference0.919570.06
57DAP/reference0.920360.248

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.96320.732
27DAP/17DAP1.012680.976
39DAP/27DAP1.038490.698
41DAP/39DAP1.051710.849
42DAP/41DAP1.033930.872
43DAP/42DAP1.032260.788
47DAP/43DAP1.031650.88
52DAP/47DAP1.017130.965
57DAP/52DAP1.074780.584
57DAP/7DAP1.005571

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.967430.296
17DAP/reference0.939470.094
27DAP/reference0.921660.014
39DAP/reference0.932910.014
41DAP/reference0.887360.067
42DAP/reference0.851610.01
43DAP/reference0.85320.064
47DAP/reference0.850760.101
52DAP/reference0.890010.066
57DAP/reference0.838880.031

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.939570.518
17DAP/reference1.162650.257
27DAP/reference1.174220.212
39DAP/reference1.267820.043
41DAP/reference1.013780.531
42DAP/reference0.976370.482
43DAP/reference1.329050.112
47DAP/reference0.947940.292
52DAP/reference1.215630.181
57DAP/reference1.080220.786

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.128860.027
17DAP/reference1.021830.602
27DAP/reference0.945010.055
39DAP/reference0.957180.271
41DAP/reference0.965050.167
42DAP/reference1.009931
43DAP/reference1.026711
47DAP/reference1.149960.562
52DAP/reference0.796290.068
57DAP/reference0.869920.12

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.940161
26DAP/20DAP0.990781
34DAP/26DAP1.171850.542
51DAP/34DAP0.8750.205
52DAP/51DAP1.12140.288
53DAP/52DAP0.986680.978
55DAP/53DAP1.14560.234
57DAP/55DAP0.973240.855
62DAP/57DAP1.102991
68DAP/62DAP0.838490.579
68DAP/14DAP1.529370.676

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.809230.057

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.194630.267
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.40919

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.101370.877
1-1-2/M820.791651
12-2/M820.94357
12-4/M820.801731
1-3/M820.726890.378
2-1-1/M820.90858
2-1/M82N/AN/A
2-6/M821.324450.594
3-2/M820.873261
4-1-1/M821.115121
4-1/M820.699620.665
4-3-2/M820.672140.698
4-3/M821.44081
5-3/M821.061921
6-2/M820.64296
6-3/M820.971981
7-1/M820.82686
7-2/M82N/AN/A
9-3-2/M820.781831

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.925411
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.976821
IL12-4/WTpooled0.717450.71
IL1-4/WTpooled0.938171
WT/WTpooled1.111690.957

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.270671

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.021650.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.996431
DC3000/delta hrp 24h1.070570.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.129720.27
DC3000 delta B/DC3000 delta AB1.232760.204

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.985481
Exp 36h1.844280.693
Exp 60h1.786490.215

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.031721
Var 0h0.889720.933
Var 12h I row2-row11.08460.692
Var 12h NI row2-row11.039891
Var 36h I row2-row10.922721
Var 36h NI row2-row11.017041
Var 60h I row2-row11.197540.562
Var 60h NI row2-row11.131550.904
Time course 0hI-0hNI1.037380.852
Time course 12hI-12hNI1.060160.544
Time course 36hI-36hNI0.981080.58
Time course 60hI-60hNI1.38210.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.123680.384
transgenic ySAMdc/azygous control (breaker)1.070631
transgenic ySAMdc/azygous control (red)1.123080.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.978160.242

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.870960.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.705610.172
Manapal/WT (break)0.907961
Manapal/WT (red)0.849410.181