Expression of 1-1-8.2.15.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.87798 | 0.428 |
27DAP/17DAP | 0.42827 | 0.027 |
39DAP/27DAP | 1.46135 | 0.199 |
41DAP/39DAP | 1.16269 | 0.535 |
42DAP/41DAP | 1.365 | 0.962 |
43DAP/42DAP | 0.70514 | 0.697 |
47DAP/43DAP | 0.90072 | 0.522 |
52DAP/47DAP | 1.16171 | 0.956 |
57DAP/52DAP | 0.92668 | 0.926 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.49774 | 0.007 |
17DAP/reference | 1.9128 | 0.04 |
27DAP/reference | 1.69729 | 0.009 |
39DAP/reference | 0.83771 | 0.381 |
41DAP/reference | 1.89838 | 0.036 |
42DAP/reference | 1.02475 | 0.628 |
43DAP/reference | 0.81253 | |
47DAP/reference | 1.09904 | 0.541 |
52DAP/reference | 1.17677 | |
57DAP/reference | 0.77313 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | N/A | N/A |
27DAP/17DAP | 1.9486 | 1 |
39DAP/27DAP | 0.7017 | 0.044 |
41DAP/39DAP | 0.42024 | |
42DAP/41DAP | N/A | N/A |
43DAP/42DAP | 0.95316 | |
47DAP/43DAP | N/A | N/A |
52DAP/47DAP | 0.5237 | |
57DAP/52DAP | 0.77561 | 0.461 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8967 | 0.061 |
17DAP/reference | 0.89304 | 0.031 |
27DAP/reference | 0.92787 | 0.013 |
39DAP/reference | 0.95089 | 0.095 |
41DAP/reference | 0.91454 | 0.014 |
42DAP/reference | 0.89447 | 0.034 |
43DAP/reference | 0.9045 | 0.145 |
47DAP/reference | 0.72732 | |
52DAP/reference | 0.86283 | 0.09 |
57DAP/reference | 0.81801 | 0.042 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08011 | 0.582 |
17DAP/reference | 1.04611 | 0.805 |
27DAP/reference | 1.24349 | 0.023 |
39DAP/reference | 0.82193 | 0.469 |
41DAP/reference | 1.22934 | 0.241 |
42DAP/reference | 1.36692 | 0.185 |
43DAP/reference | 1.25229 | 0.142 |
47DAP/reference | 1.26726 | 0.247 |
52DAP/reference | 0.52958 | |
57DAP/reference | 1.10742 | |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91057 | 0.061 |
17DAP/reference | 0.89737 | 0.499 |
27DAP/reference | 0.95203 | 0.078 |
39DAP/reference | 0.96346 | 0.133 |
41DAP/reference | 0.92784 | 0.043 |
42DAP/reference | 0.93867 | 0.023 |
43DAP/reference | 0.98022 | 0.545 |
47DAP/reference | 0.2377 | |
52DAP/reference | 0.90526 | 0.247 |
57DAP/reference | 1.01661 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25176 | 1 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 0.70201 | 0.834 |
51DAP/34DAP | 1.27866 | 0.692 |
52DAP/51DAP | N/A | N/A |
53DAP/52DAP | 1.70971 | 0.565 |
55DAP/53DAP | 0.58296 | 0.577 |
57DAP/55DAP | 0.97556 | 0.774 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.62069 | 0.017 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.66081 | 0.411 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12101 | 0.277 |
IL2-6/WTpooled | 1.14832 | 0.584 |
IL7-5/WTpooled | 0.78501 | 1 |
IL7-3/WTpooled | 1.15346 | 1 |
IL12-4/WTpooled | 1.30587 | 0.532 |
IL1-4/WTpooled | 1.0461 | 1 |
WT/WTpooled | 0.95481 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 1.4025 | |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.09503 | 0.374 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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