Expression of 1-1-8.2.15.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.877980.428
27DAP/17DAP0.428270.027
39DAP/27DAP1.461350.199
41DAP/39DAP1.162690.535
42DAP/41DAP1.3650.962
43DAP/42DAP0.705140.697
47DAP/43DAP0.900720.522
52DAP/47DAP1.161710.956
57DAP/52DAP0.926680.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.497740.007
17DAP/reference1.91280.04
27DAP/reference1.697290.009
39DAP/reference0.837710.381
41DAP/reference1.898380.036
42DAP/reference1.024750.628
43DAP/reference0.81253
47DAP/reference1.099040.541
52DAP/reference1.17677
57DAP/reference0.77313

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP1.94861
39DAP/27DAP0.70170.044
41DAP/39DAP0.42024
42DAP/41DAPN/AN/A
43DAP/42DAP0.95316
47DAP/43DAPN/AN/A
52DAP/47DAP0.5237
57DAP/52DAP0.775610.461
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.89670.061
17DAP/reference0.893040.031
27DAP/reference0.927870.013
39DAP/reference0.950890.095
41DAP/reference0.914540.014
42DAP/reference0.894470.034
43DAP/reference0.90450.145
47DAP/reference0.72732
52DAP/reference0.862830.09
57DAP/reference0.818010.042

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.080110.582
17DAP/reference1.046110.805
27DAP/reference1.243490.023
39DAP/reference0.821930.469
41DAP/reference1.229340.241
42DAP/reference1.366920.185
43DAP/reference1.252290.142
47DAP/reference1.267260.247
52DAP/reference0.52958
57DAP/reference1.10742

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910570.061
17DAP/reference0.897370.499
27DAP/reference0.952030.078
39DAP/reference0.963460.133
41DAP/reference0.927840.043
42DAP/reference0.938670.023
43DAP/reference0.980220.545
47DAP/reference0.2377
52DAP/reference0.905260.247
57DAP/reference1.016611

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.251761
26DAP/20DAPN/AN/A
34DAP/26DAP0.702010.834
51DAP/34DAP1.278660.692
52DAP/51DAPN/AN/A
53DAP/52DAP1.709710.565
55DAP/53DAP0.582960.577
57DAP/55DAP0.975560.774
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.620690.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.660810.411
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.121010.277
IL2-6/WTpooled1.148320.584
IL7-5/WTpooled0.785011
IL7-3/WTpooled1.153461
IL12-4/WTpooled1.305870.532
IL1-4/WTpooled1.04611
WT/WTpooled0.954811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.4025

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.095030.374
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A