Expression of 1-1-8.2.15.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.915290.464
27DAP/17DAP1.077040.86
39DAP/27DAP0.946390.67
41DAP/39DAP1.351390.293
42DAP/41DAP0.987211
43DAP/42DAP1.020871
47DAP/43DAP1.181960.377
52DAP/47DAP1.058510.983
57DAP/52DAP0.965790.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.943640.269
17DAP/reference1.05170.161
27DAP/reference1.081990.314
39DAP/reference1.062480.311
41DAP/reference1.061760.287
42DAP/reference1.044980.324
43DAP/reference1.031960.787
47DAP/reference1.03480.463
52DAP/reference1.04280.8
57DAP/reference1.018150.783

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.986170.763
27DAP/17DAP0.979480.878
39DAP/27DAP1.049630.575
41DAP/39DAP1.103720.371
42DAP/41DAP1.031240.879
43DAP/42DAP1.006910.788
47DAP/43DAP1.00970.957
52DAP/47DAP1.010360.986
57DAP/52DAP0.942480.591
57DAP/7DAP1.061791

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.047720.813
17DAP/reference1.1170.18
27DAP/reference1.013180.974
39DAP/reference1.160190.027
41DAP/reference1.149360.126
42DAP/reference1.156760.007
43DAP/reference1.281280.056
47DAP/reference0.976970.671
52DAP/reference1.102710.081
57DAP/reference1.044390.612

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.962260.548
17DAP/reference1.001860.805
27DAP/reference0.965840.467
39DAP/reference0.917370.156
41DAP/reference0.958860.364
42DAP/reference0.998820.655
43DAP/reference0.891860.147
47DAP/reference1.044390.816
52DAP/reference1.004070.988
57DAP/reference0.911170.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.001121
17DAP/reference1.001160.918
27DAP/reference1.081820.096
39DAP/reference1.097570.069
41DAP/reference1.192790.15
42DAP/reference1.125810.408
43DAP/reference1.135760.445
47DAP/reference1.059330.265
52DAP/reference1.287580.146
57DAP/reference1.087340.971

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.990391
26DAP/20DAP0.983891
34DAP/26DAP0.991641
51DAP/34DAP0.974750.785
52DAP/51DAP1.008420.915
53DAP/52DAP0.960110.854
55DAP/53DAP0.95060.796
57DAP/55DAP1.261880.793
62DAP/57DAP1.201180.445
68DAP/62DAP0.935550.722
68DAP/14DAP1.024060.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.977540.547

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.31481
Mature Green Tomato/Ripe Tomato0.892160.287
Immature Eggplant/Mature Eggplant1.005871
Ripe Pepper/Ripe Tomato0.19636
Mature Eggplant/Ripe Tomato0.56899

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.026721
1-1-2/M821.01651
12-2/M821.015711
12-4/M820.901331
1-3/M820.875970.378
2-1-1/M821.102430.764
2-1/M821.486380.345
2-6/M821.177890.505
3-2/M821.05364
4-1-1/M820.936961
4-1/M820.835891
4-3-2/M820.788220.698
4-3/M820.90761
5-3/M821.008131
6-2/M821.038031
6-3/M820.987581
7-1/M821.001961
7-2/M820.944180.796
9-3-2/M820.59142

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.18472
IL2-6/WTpooled1.070360.788
IL7-5/WTpooled1.6334
IL7-3/WTpooled0.997391
IL12-4/WTpooled1.435630.516
IL1-4/WTpooled1.102761
WT/WTpooled1.062051

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.949071
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.64204
DC3000/delta hrp 24h1.091060.397

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.133930.055
DC3000 delta B/DC3000 delta AB1.058560.472

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.966111
Var 0h0.859741
Var 12h I row2-row11.047490.58
Var 12h NI row2-row11.143841
Var 36h I row2-row11.002041
Var 36h NI row2-row10.967150.791
Var 60h I row2-row11.778211
Var 60h NI row2-row11.166220.904
Time course 0hI-0hNI1.118240.867
Time course 12hI-12hNI0.993081
Time course 36hI-36hNI0.858420.148
Time course 60hI-60hNI1.092930.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.118260.654
transgenic ySAMdc/azygous control (breaker)1.24770.172
transgenic ySAMdc/azygous control (red)1.020121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.974120.14

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.820490.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.039581
Manapal/WT (break)0.64940.299
Manapal/WT (red)0.743150.503