Expression of 1-1-8.2.16.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.54807 | 0.101 |
27DAP/17DAP | 1.61413 | 0.532 |
39DAP/27DAP | 1.50696 | 0.378 |
41DAP/39DAP | 0.58273 | 0.046 |
42DAP/41DAP | 1.74036 | 0.126 |
43DAP/42DAP | 1.94477 | 0.595 |
47DAP/43DAP | 2.31395 | 0.188 |
52DAP/47DAP | 1.46673 | 0.472 |
57DAP/52DAP | 1.51866 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08378 | 0.093 |
17DAP/reference | 0.92336 | 0.278 |
27DAP/reference | 1.04888 | 0.139 |
39DAP/reference | 1.04652 | 0.106 |
41DAP/reference | 0.92086 | 0.341 |
42DAP/reference | 1.02856 | 0.352 |
43DAP/reference | 1.09089 | 0.05 |
47DAP/reference | 1.48709 | 0.002 |
52DAP/reference | 1.24506 | 0.05 |
57DAP/reference | 1.16859 | 0.039 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04467 | 0.65 |
27DAP/17DAP | 1.02689 | 0.938 |
39DAP/27DAP | 0.95396 | 0.507 |
41DAP/39DAP | 0.94406 | 0.849 |
42DAP/41DAP | 1.06562 | 0.615 |
43DAP/42DAP | 0.99228 | 0.928 |
47DAP/43DAP | 1.01164 | 0.914 |
52DAP/47DAP | 0.97833 | 0.905 |
57DAP/52DAP | 1.00626 | 1 |
57DAP/7DAP | 1.02445 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88167 | |
17DAP/reference | 0.93073 | 0.031 |
27DAP/reference | 0.97139 | 0.375 |
39DAP/reference | 1.00923 | 0.538 |
41DAP/reference | 1.00671 | 1 |
42DAP/reference | 1.14689 | 0.012 |
43DAP/reference | 1.01965 | 0.603 |
47DAP/reference | 0.90993 | 0.079 |
52DAP/reference | 1.04384 | 0.941 |
57DAP/reference | 1.02074 | 0.746 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02222 | 0.724 |
17DAP/reference | 0.99458 | 0.747 |
27DAP/reference | 1.0666 | 0.704 |
39DAP/reference | 0.94881 | 0.178 |
41DAP/reference | 0.9601 | 0.384 |
42DAP/reference | 0.95776 | 0.089 |
43DAP/reference | 1.00974 | 0.957 |
47DAP/reference | 0.97089 | 0.41 |
52DAP/reference | 0.8933 | 0.005 |
57DAP/reference | 1.03404 | 0.737 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94166 | 0.05 |
17DAP/reference | 0.933 | 0.071 |
27DAP/reference | 0.92312 | 0.031 |
39DAP/reference | 0.91888 | 0.122 |
41DAP/reference | 0.98004 | 0.417 |
42DAP/reference | 1.02179 | 0.863 |
43DAP/reference | 0.98868 | 0.639 |
47DAP/reference | 1.13085 | 0.104 |
52DAP/reference | 1.23552 | 0.116 |
57DAP/reference | 1.34141 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97595 | 1 |
26DAP/20DAP | 1.00727 | 1 |
34DAP/26DAP | 0.97474 | 0.936 |
51DAP/34DAP | 0.98062 | 0.883 |
52DAP/51DAP | 1.07782 | 0.534 |
53DAP/52DAP | 1.15834 | 0.37 |
55DAP/53DAP | 0.99913 | 0.939 |
57DAP/55DAP | 1.0642 | 0.881 |
62DAP/57DAP | 1.65319 | 0.8 |
68DAP/62DAP | 0.95556 | 0.747 |
68DAP/14DAP | 1.33784 | 0.17 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.64535 | 0.064 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.57835 | 0.193 |
Mature Green Tomato/Ripe Tomato | 0.28215 | 0.017 |
Immature Eggplant/Mature Eggplant | 1.32602 | 0.239 |
Ripe Pepper/Ripe Tomato | 0.09298 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.08954 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92214 | 0.907 |
1-1-2/M82 | 0.95811 | 0.754 |
12-2/M82 | 0.95605 | 0.955 |
12-4/M82 | 1.00911 | 1 |
1-3/M82 | 1.10172 | 1 |
2-1-1/M82 | 0.88532 | 0.465 |
2-1/M82 | 0.95266 | 1 |
2-6/M82 | 0.95271 | 1 |
3-2/M82 | 1.03747 | 0.967 |
4-1-1/M82 | 1.00755 | 1 |
4-1/M82 | 1.47113 | 0.853 |
4-3-2/M82 | 0.94868 | 1 |
4-3/M82 | 0.96183 | 1 |
5-3/M82 | 0.98882 | 1 |
6-2/M82 | 0.9254 | 1 |
6-3/M82 | 1.02137 | 1 |
7-1/M82 | 0.96169 | 1 |
7-2/M82 | 0.93106 | 0.796 |
9-3-2/M82 | 1.32474 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.0947 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00758 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.98253 | 1 |
DC3000/delta hrp 24h | 0.98833 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.1951 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.17945 | 0.206 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87803 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.82249 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01697 | 1 |
Var 0h | 1.27456 | 0.98 |
Var 12h I row2-row1 | 1.24654 | 0.215 |
Var 12h NI row2-row1 | 1.20116 | 1 |
Var 36h I row2-row1 | 1.01361 | 1 |
Var 36h NI row2-row1 | 0.83544 | 0.469 |
Var 60h I row2-row1 | 1.09915 | 1 |
Var 60h NI row2-row1 | 0.98825 | 1 |
Time course 0hI-0hNI | 1.07731 | 0.867 |
Time course 12hI-12hNI | 1.13655 | 0.43 |
Time course 36hI-36hNI | 1.02378 | 0.975 |
Time course 60hI-60hNI | 2.18611 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0693 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 1.26823 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.21847 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97704 | 0.27 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.10253 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.99518 | 0.14 |
Manapal/WT (break) | 0.82527 | 1 |
Manapal/WT (red) | 0.26784 | 0.181 |
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