Tomato Functional Genomics Database (TFGD)

Expression of 1-1-8.2.17.18

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.13507	0.904
27DAP/17DAP	1.05136	1
39DAP/27DAP	0.73255	0.462
41DAP/39DAP	2.15296	0.225
42DAP/41DAP	2.29781	0.056
43DAP/42DAP	10.4134	0.019
47DAP/43DAP	1.65844	0.201
52DAP/47DAP	0.42457	0.034
57DAP/52DAP	0.37769	0.39

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.13815	0.76
17DAP/reference	0.87659	0.038
27DAP/reference	1.10555	0.587
39DAP/reference	0.98854	0.816
41DAP/reference	1.03994	0.963
42DAP/reference	1.05455	1
43DAP/reference	0.9632	0.594
47DAP/reference	1.13683	1
52DAP/reference	1.4553	0.053
57DAP/reference	1.34132	0.028

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.19437	1
27DAP/17DAP	1.17466	0.639
39DAP/27DAP	0.78462	0.488
41DAP/39DAP	1.0995	1
42DAP/41DAP	1.14437	0.879
43DAP/42DAP	1.85907	0.027
47DAP/43DAP	1.13522	0.833
52DAP/47DAP	1.38465	0.243
57DAP/52DAP	0.68879	0.167
57DAP/7DAP	1.86472

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.02261	1
17DAP/reference	0.87915	0.167
27DAP/reference	0.71003	0.011
39DAP/reference	0.8889	0.17
41DAP/reference	0.87818	0.027
42DAP/reference	0.84556	0.016
43DAP/reference	0.8047	0.022
47DAP/reference	0.89789	0.383
52DAP/reference	0.89842	0.15
57DAP/reference	0.80458	0.009

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.09315	0.894
17DAP/reference	1.06228	0.739
27DAP/reference	0.97086	0.519
39DAP/reference	1.03403	0.769
41DAP/reference	0.98057	0.57
42DAP/reference	1.23356	0.185
43DAP/reference	0.91905	0.43
47DAP/reference	0.99209	0.625
52DAP/reference	1.26055	0.3
57DAP/reference	0.84618	0.18

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.07827	0.775
17DAP/reference	0.87483	0.335
27DAP/reference	0.80604	0.042
39DAP/reference	0.9209	0.36
41DAP/reference	1.21511	0.411
42DAP/reference	1.57677	0.07
43DAP/reference	1.36638	0.021
47DAP/reference	1.0675	0.61
52DAP/reference	0.95546	0.718
57DAP/reference	1.2708	0.255

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	3.30729	0.966
26DAP/20DAP	0.69168	0.228
34DAP/26DAP	0.99513	1
51DAP/34DAP	1.06286	0.967
52DAP/51DAP	0.9216	1
53DAP/52DAP	1.29377	0.517
55DAP/53DAP	0.81971	0.515
57DAP/55DAP	0.99016	0.799
62DAP/57DAP	0.85884	0.681
68DAP/62DAP	0.83287	0.787
68DAP/14DAP	0.24029

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.92325	0.466

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.03022	0.016
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	0.3581
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	4.82921	0.694
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	1.72624
4-1-1/M82	N/A	N/A
4-1/M82	10.6136	0.466
4-3-2/M82	1.8911	0.253
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	2.78402	0.196

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.03494	1
IL2-6/WTpooled	1.31166	0.584
IL7-5/WTpooled	1.05582	0.792
IL7-3/WTpooled	0.84978	1
IL12-4/WTpooled	1.11735	0.785
IL1-4/WTpooled	0.97337	0.834
WT/WTpooled	1.06486	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	10.5722
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	0.84812	0.909
DC3000/delta hrp 24h	1.04295	0.633

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.12716	1
Var 0h	1.13431	1
Var 12h I row2-row1	1.1631	0.613
Var 12h NI row2-row1	0.53748	0.627
Var 36h I row2-row1	0.25749
Var 36h NI row2-row1	1.00646
Var 60h I row2-row1	1.05721	1
Var 60h NI row2-row1	1.13556
Time course 0hI-0hNI	1.05074	0.852
Time course 12hI-12hNI	1.00261	0.9
Time course 36hI-36hNI	1.05445	0.589
Time course 60hI-60hNI	0.75066	0.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	2.44845	0.161
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.18812	0.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	0.43623	0.183