Expression of 1-1-8.2.17.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21077 | 0.725 |
27DAP/17DAP | 1.09609 | 0.88 |
39DAP/27DAP | 1.0111 | 0.857 |
41DAP/39DAP | 1.19031 | 0.216 |
42DAP/41DAP | 1.13542 | 0.92 |
43DAP/42DAP | 0.95962 | 0.898 |
47DAP/43DAP | 0.92884 | 0.736 |
52DAP/47DAP | 1.06095 | 0.976 |
57DAP/52DAP | 1.06792 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11108 | 0.252 |
17DAP/reference | 1.05742 | 0.442 |
27DAP/reference | 1.10852 | 0.036 |
39DAP/reference | 0.9286 | 0.234 |
41DAP/reference | 1.05025 | 0.587 |
42DAP/reference | 1.18587 | 0.002 |
43DAP/reference | 1.15944 | 0.083 |
47DAP/reference | 2.13718 | 0.001 |
52DAP/reference | 1.77079 | 0.007 |
57DAP/reference | 1.2741 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82554 | 0.062 |
27DAP/17DAP | 1.01007 | 1 |
39DAP/27DAP | 1.00751 | 1 |
41DAP/39DAP | 1.0595 | 0.849 |
42DAP/41DAP | 0.84802 | 0.241 |
43DAP/42DAP | 1.04667 | 0.351 |
47DAP/43DAP | 1.04586 | 0.812 |
52DAP/47DAP | 0.90337 | 0.207 |
57DAP/52DAP | 1.08634 | 0.504 |
57DAP/7DAP | 0.99787 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92579 | 0.074 |
17DAP/reference | 0.93393 | 0.072 |
27DAP/reference | 0.89682 | 0.01 |
39DAP/reference | 0.97828 | 0.354 |
41DAP/reference | 0.98647 | 0.512 |
42DAP/reference | 0.93934 | 0.289 |
43DAP/reference | 0.95562 | 0.145 |
47DAP/reference | 0.95384 | 0.293 |
52DAP/reference | 0.93536 | 0.196 |
57DAP/reference | 0.98799 | 0.61 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00707 | 0.885 |
17DAP/reference | 1.24692 | 0.045 |
27DAP/reference | 1.08825 | 0.446 |
39DAP/reference | 1.10155 | 0.502 |
41DAP/reference | 1.03218 | 1 |
42DAP/reference | 1.16983 | 0.22 |
43DAP/reference | 1.28812 | 0.188 |
47DAP/reference | 1.08548 | 0.388 |
52DAP/reference | 1.00761 | 1 |
57DAP/reference | 1.01829 | 0.908 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92683 | 0.183 |
17DAP/reference | 1.00003 | 0.855 |
27DAP/reference | 0.96327 | 0.319 |
39DAP/reference | 0.92389 | 0.029 |
41DAP/reference | 1.00554 | 1 |
42DAP/reference | 1.08099 | 0.775 |
43DAP/reference | 1.33034 | 0.25 |
47DAP/reference | 1.46715 | 0.015 |
52DAP/reference | 1.05823 | 0.99 |
57DAP/reference | 2.43098 | 0.029 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03534 | 0.945 |
26DAP/20DAP | 0.91102 | 0.512 |
34DAP/26DAP | 0.92277 | 0.735 |
51DAP/34DAP | 1.03968 | 0.829 |
52DAP/51DAP | 1.04025 | 0.676 |
53DAP/52DAP | 1.17073 | 0.296 |
55DAP/53DAP | 1.01822 | 0.991 |
57DAP/55DAP | 0.94462 | 0.724 |
62DAP/57DAP | 1.15611 | 0.8 |
68DAP/62DAP | 0.98706 | 0.81 |
68DAP/14DAP | 1.24282 | 0.419 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0263 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.0247 | 1 |
Mature Green Tomato/Ripe Tomato | 0.75264 | |
Immature Eggplant/Mature Eggplant | 1.13804 | 0.081 |
Ripe Pepper/Ripe Tomato | 0.18799 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.15776 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97108 | 0.944 |
1-1-2/M82 | 0.88381 | 0.958 |
12-2/M82 | 1.13187 | 1 |
12-4/M82 | 0.94854 | 1 |
1-3/M82 | 0.93862 | 0.501 |
2-1-1/M82 | 1.1139 | |
2-1/M82 | 0.96323 | 1 |
2-6/M82 | 1.23342 | 0.452 |
3-2/M82 | 0.8523 | |
4-1-1/M82 | 0.91499 | 1 |
4-1/M82 | 0.9672 | 1 |
4-3-2/M82 | 0.73398 | 0.487 |
4-3/M82 | 0.78336 | 0.611 |
5-3/M82 | 0.98923 | 1 |
6-2/M82 | 1.18688 | 1 |
6-3/M82 | 1.05924 | 1 |
7-1/M82 | 1.07566 | |
7-2/M82 | 1.0235 | 1 |
9-3-2/M82 | 0.72898 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.04163 | 1 |
IL2-6/WTpooled | 1.95316 | |
IL7-5/WTpooled | 1.06949 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.85508 | |
IL1-4/WTpooled | 1.24242 | 1 |
WT/WTpooled | 1.1545 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.77484 | 0.167 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03194 | 0.921 |
DC3000/delta hrp 6h | 0.97833 | 0.95 |
DC3000/delta hrp 12h | 1.07229 | 1 |
DC3000/delta hrp 24h | 0.9528 | 0.662 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10607 | 0.057 |
DC3000 delta B/DC3000 delta AB | 1.0078 | 0.771 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09047 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.13617 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01466 | 1 |
Var 0h | 0.88508 | 1 |
Var 12h I row2-row1 | 1.12391 | 0.263 |
Var 12h NI row2-row1 | 0.76383 | 0.546 |
Var 36h I row2-row1 | 0.83682 | 0.805 |
Var 36h NI row2-row1 | 0.89458 | 0.584 |
Var 60h I row2-row1 | 0.97098 | 1 |
Var 60h NI row2-row1 | 1.16131 | 0.904 |
Time course 0hI-0hNI | 1.27415 | 0.833 |
Time course 12hI-12hNI | 1.03476 | 0.788 |
Time course 36hI-36hNI | 1.08358 | 0.651 |
Time course 60hI-60hNI | 1.57147 | 0.019 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.1347 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 1.19701 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.1271 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.10606 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.56498 | 0.307 |
Manapal/WT (break) | 0.93345 | 1 |
Manapal/WT (red) | 1.14174 | 1 |
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