Expression of 1-1-8.2.17.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.210770.725
27DAP/17DAP1.096090.88
39DAP/27DAP1.01110.857
41DAP/39DAP1.190310.216
42DAP/41DAP1.135420.92
43DAP/42DAP0.959620.898
47DAP/43DAP0.928840.736
52DAP/47DAP1.060950.976
57DAP/52DAP1.067920.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.111080.252
17DAP/reference1.057420.442
27DAP/reference1.108520.036
39DAP/reference0.92860.234
41DAP/reference1.050250.587
42DAP/reference1.185870.002
43DAP/reference1.159440.083
47DAP/reference2.137180.001
52DAP/reference1.770790.007
57DAP/reference1.27410.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.825540.062
27DAP/17DAP1.010071
39DAP/27DAP1.007511
41DAP/39DAP1.05950.849
42DAP/41DAP0.848020.241
43DAP/42DAP1.046670.351
47DAP/43DAP1.045860.812
52DAP/47DAP0.903370.207
57DAP/52DAP1.086340.504
57DAP/7DAP0.997871

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.925790.074
17DAP/reference0.933930.072
27DAP/reference0.896820.01
39DAP/reference0.978280.354
41DAP/reference0.986470.512
42DAP/reference0.939340.289
43DAP/reference0.955620.145
47DAP/reference0.953840.293
52DAP/reference0.935360.196
57DAP/reference0.987990.61

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.007070.885
17DAP/reference1.246920.045
27DAP/reference1.088250.446
39DAP/reference1.101550.502
41DAP/reference1.032181
42DAP/reference1.169830.22
43DAP/reference1.288120.188
47DAP/reference1.085480.388
52DAP/reference1.007611
57DAP/reference1.018290.908

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.926830.183
17DAP/reference1.000030.855
27DAP/reference0.963270.319
39DAP/reference0.923890.029
41DAP/reference1.005541
42DAP/reference1.080990.775
43DAP/reference1.330340.25
47DAP/reference1.467150.015
52DAP/reference1.058230.99
57DAP/reference2.430980.029

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.035340.945
26DAP/20DAP0.911020.512
34DAP/26DAP0.922770.735
51DAP/34DAP1.039680.829
52DAP/51DAP1.040250.676
53DAP/52DAP1.170730.296
55DAP/53DAP1.018220.991
57DAP/55DAP0.944620.724
62DAP/57DAP1.156110.8
68DAP/62DAP0.987060.81
68DAP/14DAP1.242820.419

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.02631

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.02471
Mature Green Tomato/Ripe Tomato0.75264
Immature Eggplant/Mature Eggplant1.138040.081
Ripe Pepper/Ripe Tomato0.187990.224
Mature Eggplant/Ripe Tomato0.157760.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.971080.944
1-1-2/M820.883810.958
12-2/M821.131871
12-4/M820.948541
1-3/M820.938620.501
2-1-1/M821.1139
2-1/M820.963231
2-6/M821.233420.452
3-2/M820.8523
4-1-1/M820.914991
4-1/M820.96721
4-3-2/M820.733980.487
4-3/M820.783360.611
5-3/M820.989231
6-2/M821.186881
6-3/M821.059241
7-1/M821.07566
7-2/M821.02351
9-3-2/M820.72898

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.041631
IL2-6/WTpooled1.95316
IL7-5/WTpooled1.06949
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.85508
IL1-4/WTpooled1.242421
WT/WTpooled1.15451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.774840.167

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.031940.921
DC3000/delta hrp 6h0.978330.95
DC3000/delta hrp 12h1.072291
DC3000/delta hrp 24h0.95280.662

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.106070.057
DC3000 delta B/DC3000 delta AB1.00780.771

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.090471
Exp 36hN/AN/A
Exp 60h1.136171

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.014661
Var 0h0.885081
Var 12h I row2-row11.123910.263
Var 12h NI row2-row10.763830.546
Var 36h I row2-row10.836820.805
Var 36h NI row2-row10.894580.584
Var 60h I row2-row10.970981
Var 60h NI row2-row11.161310.904
Time course 0hI-0hNI1.274150.833
Time course 12hI-12hNI1.034760.788
Time course 36hI-36hNI1.083580.651
Time course 60hI-60hNI1.571470.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.13470.511
transgenic ySAMdc/azygous control (breaker)1.197010.162
transgenic ySAMdc/azygous control (red)1.12710.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.106060.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.564980.307
Manapal/WT (break)0.933451
Manapal/WT (red)1.141741