Expression of 1-1-8.2.17.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.32128 | 0.725 |
27DAP/17DAP | 0.55693 | 0.244 |
39DAP/27DAP | 1.17575 | 0.82 |
41DAP/39DAP | 0.74781 | 0.223 |
42DAP/41DAP | 0.69142 | 0.774 |
43DAP/42DAP | 1.3304 | 0.991 |
47DAP/43DAP | 1.7032 | 0.527 |
52DAP/47DAP | 1.12987 | 0.883 |
57DAP/52DAP | 1.00782 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03548 | 0.567 |
17DAP/reference | 1.07001 | 0.092 |
27DAP/reference | 1.02625 | 0.88 |
39DAP/reference | 1.05569 | 0.27 |
41DAP/reference | 1.11923 | 0.393 |
42DAP/reference | 0.96261 | 0.182 |
43DAP/reference | 1.06686 | 0.569 |
47DAP/reference | 0.91493 | 0.035 |
52DAP/reference | 0.84382 | 0.115 |
57DAP/reference | 0.80938 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11906 | 0.699 |
27DAP/17DAP | 0.68314 | 0.172 |
39DAP/27DAP | 1.30601 | 0.337 |
41DAP/39DAP | 1.42823 | 0.347 |
42DAP/41DAP | 1.16434 | 0.687 |
43DAP/42DAP | 1.3551 | 0.212 |
47DAP/43DAP | 1.12475 | 0.934 |
52DAP/47DAP | 1.44886 | 0.666 |
57DAP/52DAP | 0.9871 | 0.813 |
57DAP/7DAP | 0.76639 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91441 | 0.246 |
17DAP/reference | 0.75673 | 0.018 |
27DAP/reference | 0.94418 | 0.248 |
39DAP/reference | 0.79112 | 0.018 |
41DAP/reference | 0.88755 | 0.09 |
42DAP/reference | 0.76888 | 0.038 |
43DAP/reference | 0.84148 | 0.1 |
47DAP/reference | 0.75941 | 0.038 |
52DAP/reference | 0.80901 | 0.035 |
57DAP/reference | 0.832 | 0.077 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00313 | 0.97 |
17DAP/reference | 1.01202 | 0.941 |
27DAP/reference | 0.90638 | 0.292 |
39DAP/reference | 0.92325 | 0.322 |
41DAP/reference | 0.80413 | 0.018 |
42DAP/reference | 0.8542 | 0.032 |
43DAP/reference | 1.18051 | 0.222 |
47DAP/reference | 0.9052 | 0.069 |
52DAP/reference | 0.99702 | 0.713 |
57DAP/reference | 1.212 | 0.229 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9976 | 0.804 |
17DAP/reference | 0.90562 | 0.328 |
27DAP/reference | 0.72547 | 0.036 |
39DAP/reference | 0.76586 | 0.035 |
41DAP/reference | 0.83346 | 0.022 |
42DAP/reference | 0.72192 | 0.017 |
43DAP/reference | 0.68873 | 0.035 |
47DAP/reference | 0.97793 | 0.538 |
52DAP/reference | 0.76628 | 0.16 |
57DAP/reference | 0.48265 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1469 | 0.966 |
26DAP/20DAP | 1.16948 | 1 |
34DAP/26DAP | 0.88326 | 0.693 |
51DAP/34DAP | 1.29606 | 0.068 |
52DAP/51DAP | 0.89816 | 1 |
53DAP/52DAP | 1.5718 | 0.212 |
55DAP/53DAP | 1.48823 | 0.153 |
57DAP/55DAP | 1.02693 | |
62DAP/57DAP | 0.82489 | 0.681 |
68DAP/62DAP | 0.89069 | 0.722 |
68DAP/14DAP | 1.01406 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.25066 | 0.391 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.35557 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.12754 | |
IL1-4/WTpooled | 1.35122 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.77485 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.2373 | 1 |
DC3000/delta hrp 24h | 0.85613 | 0.216 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04039 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99471 | |
Var 0h | 1.38093 | 0.782 |
Var 12h I row2-row1 | 1.99496 | 0.613 |
Var 12h NI row2-row1 | 1.24681 | 1 |
Var 36h I row2-row1 | 0.85257 | |
Var 36h NI row2-row1 | 2.17366 | 1 |
Var 60h I row2-row1 | 0.69353 | 0.832 |
Var 60h NI row2-row1 | 1.26988 | 1 |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | 0.81458 | |
Time course 36hI-36hNI | 1.44332 | 0.316 |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.20791 | 0.325 |
transgenic ySAMdc/azygous control (breaker) | 1.03329 | 1 |
transgenic ySAMdc/azygous control (red) | 1.03418 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.17432 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83453 | 1 |
Manapal/WT (break) | 1.18198 | 0.183 |
Manapal/WT (red) | N/A | N/A |
|
|