Tomato Functional Genomics Database (TFGD)

Expression of 1-1-8.2.17.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.32128	0.725
27DAP/17DAP	0.55693	0.244
39DAP/27DAP	1.17575	0.82
41DAP/39DAP	0.74781	0.223
42DAP/41DAP	0.69142	0.774
43DAP/42DAP	1.3304	0.991
47DAP/43DAP	1.7032	0.527
52DAP/47DAP	1.12987	0.883
57DAP/52DAP	1.00782	0.983

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.03548	0.567
17DAP/reference	1.07001	0.092
27DAP/reference	1.02625	0.88
39DAP/reference	1.05569	0.27
41DAP/reference	1.11923	0.393
42DAP/reference	0.96261	0.182
43DAP/reference	1.06686	0.569
47DAP/reference	0.91493	0.035
52DAP/reference	0.84382	0.115
57DAP/reference	0.80938	0.013

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.11906	0.699
27DAP/17DAP	0.68314	0.172
39DAP/27DAP	1.30601	0.337
41DAP/39DAP	1.42823	0.347
42DAP/41DAP	1.16434	0.687
43DAP/42DAP	1.3551	0.212
47DAP/43DAP	1.12475	0.934
52DAP/47DAP	1.44886	0.666
57DAP/52DAP	0.9871	0.813
57DAP/7DAP	0.76639	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.91441	0.246
17DAP/reference	0.75673	0.018
27DAP/reference	0.94418	0.248
39DAP/reference	0.79112	0.018
41DAP/reference	0.88755	0.09
42DAP/reference	0.76888	0.038
43DAP/reference	0.84148	0.1
47DAP/reference	0.75941	0.038
52DAP/reference	0.80901	0.035
57DAP/reference	0.832	0.077

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00313	0.97
17DAP/reference	1.01202	0.941
27DAP/reference	0.90638	0.292
39DAP/reference	0.92325	0.322
41DAP/reference	0.80413	0.018
42DAP/reference	0.8542	0.032
43DAP/reference	1.18051	0.222
47DAP/reference	0.9052	0.069
52DAP/reference	0.99702	0.713
57DAP/reference	1.212	0.229

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.9976	0.804
17DAP/reference	0.90562	0.328
27DAP/reference	0.72547	0.036
39DAP/reference	0.76586	0.035
41DAP/reference	0.83346	0.022
42DAP/reference	0.72192	0.017
43DAP/reference	0.68873	0.035
47DAP/reference	0.97793	0.538
52DAP/reference	0.76628	0.16
57DAP/reference	0.48265	0.018

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.1469	0.966
26DAP/20DAP	1.16948	1
34DAP/26DAP	0.88326	0.693
51DAP/34DAP	1.29606	0.068
52DAP/51DAP	0.89816	1
53DAP/52DAP	1.5718	0.212
55DAP/53DAP	1.48823	0.153
57DAP/55DAP	1.02693
62DAP/57DAP	0.82489	0.681
68DAP/62DAP	0.89069	0.722
68DAP/14DAP	1.01406	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.25066	0.391

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.35557
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	1.12754
IL1-4/WTpooled	1.35122	1
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.77485	1
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.2373	1
DC3000/delta hrp 24h	0.85613	0.216

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.04039	1
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.99471
Var 0h	1.38093	0.782
Var 12h I row2-row1	1.99496	0.613
Var 12h NI row2-row1	1.24681	1
Var 36h I row2-row1	0.85257
Var 36h NI row2-row1	2.17366	1
Var 60h I row2-row1	0.69353	0.832
Var 60h NI row2-row1	1.26988	1
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	0.81458
Time course 36hI-36hNI	1.44332	0.316
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.20791	0.325
transgenic ySAMdc/azygous control (breaker)	1.03329	1
transgenic ySAMdc/azygous control (red)	1.03418	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.17432	0.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.83453	1
Manapal/WT (break)	1.18198	0.183
Manapal/WT (red)	N/A	N/A