Expression of 1-1-8.2.17.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.321280.725
27DAP/17DAP0.556930.244
39DAP/27DAP1.175750.82
41DAP/39DAP0.747810.223
42DAP/41DAP0.691420.774
43DAP/42DAP1.33040.991
47DAP/43DAP1.70320.527
52DAP/47DAP1.129870.883
57DAP/52DAP1.007820.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.035480.567
17DAP/reference1.070010.092
27DAP/reference1.026250.88
39DAP/reference1.055690.27
41DAP/reference1.119230.393
42DAP/reference0.962610.182
43DAP/reference1.066860.569
47DAP/reference0.914930.035
52DAP/reference0.843820.115
57DAP/reference0.809380.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.119060.699
27DAP/17DAP0.683140.172
39DAP/27DAP1.306010.337
41DAP/39DAP1.428230.347
42DAP/41DAP1.164340.687
43DAP/42DAP1.35510.212
47DAP/43DAP1.124750.934
52DAP/47DAP1.448860.666
57DAP/52DAP0.98710.813
57DAP/7DAP0.766391

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.914410.246
17DAP/reference0.756730.018
27DAP/reference0.944180.248
39DAP/reference0.791120.018
41DAP/reference0.887550.09
42DAP/reference0.768880.038
43DAP/reference0.841480.1
47DAP/reference0.759410.038
52DAP/reference0.809010.035
57DAP/reference0.8320.077

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.003130.97
17DAP/reference1.012020.941
27DAP/reference0.906380.292
39DAP/reference0.923250.322
41DAP/reference0.804130.018
42DAP/reference0.85420.032
43DAP/reference1.180510.222
47DAP/reference0.90520.069
52DAP/reference0.997020.713
57DAP/reference1.2120.229

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.99760.804
17DAP/reference0.905620.328
27DAP/reference0.725470.036
39DAP/reference0.765860.035
41DAP/reference0.833460.022
42DAP/reference0.721920.017
43DAP/reference0.688730.035
47DAP/reference0.977930.538
52DAP/reference0.766280.16
57DAP/reference0.482650.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.14690.966
26DAP/20DAP1.169481
34DAP/26DAP0.883260.693
51DAP/34DAP1.296060.068
52DAP/51DAP0.898161
53DAP/52DAP1.57180.212
55DAP/53DAP1.488230.153
57DAP/55DAP1.02693
62DAP/57DAP0.824890.681
68DAP/62DAP0.890690.722
68DAP/14DAP1.014061

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.250660.391

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.35557
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.12754
IL1-4/WTpooled1.351221
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.774851
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.23731
DC3000/delta hrp 24h0.856130.216

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.040391
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99471
Var 0h1.380930.782
Var 12h I row2-row11.994960.613
Var 12h NI row2-row11.246811
Var 36h I row2-row10.85257
Var 36h NI row2-row12.173661
Var 60h I row2-row10.693530.832
Var 60h NI row2-row11.269881
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNI0.81458
Time course 36hI-36hNI1.443320.316
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.207910.325
transgenic ySAMdc/azygous control (breaker)1.033291
transgenic ySAMdc/azygous control (red)1.034181

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.174320.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.834531
Manapal/WT (break)1.181980.183
Manapal/WT (red)N/AN/A