Expression of 1-1-8.2.18.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89055 | 0.522 |
27DAP/17DAP | 0.65034 | 0.102 |
39DAP/27DAP | 0.82097 | 0.474 |
41DAP/39DAP | 0.65101 | 0.059 |
42DAP/41DAP | 1.02382 | 1 |
43DAP/42DAP | 0.89141 | 0.801 |
47DAP/43DAP | 0.71964 | 0.242 |
52DAP/47DAP | 0.85115 | 0.539 |
57DAP/52DAP | 1.21128 | 0.93 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80673 | 0.085 |
17DAP/reference | 0.59993 | 0.009 |
27DAP/reference | 0.52475 | 0.013 |
39DAP/reference | 0.43786 | 0.011 |
41DAP/reference | 0.5454 | 0.013 |
42DAP/reference | 0.57681 | 0.001 |
43DAP/reference | 0.47874 | 0.013 |
47DAP/reference | 0.44415 | 0.001 |
52DAP/reference | 0.42489 | 0.014 |
57DAP/reference | 0.51842 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.88579 | 0.036 |
27DAP/17DAP | 0.83569 | 0.475 |
39DAP/27DAP | 0.44635 | 0.028 |
41DAP/39DAP | 1.30289 | 0.304 |
42DAP/41DAP | 0.83626 | 0.164 |
43DAP/42DAP | 0.65733 | 0.026 |
47DAP/43DAP | 1.11824 | 0.735 |
52DAP/47DAP | 0.82589 | 0.575 |
57DAP/52DAP | 1.7537 | 0.346 |
57DAP/7DAP | 0.70166 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09978 | 0.338 |
17DAP/reference | 0.91214 | 0.22 |
27DAP/reference | 1.04963 | 0.804 |
39DAP/reference | 1.02643 | 1 |
41DAP/reference | 1.02603 | 0.709 |
42DAP/reference | 1.2076 | 0.132 |
43DAP/reference | 1.23983 | 0.015 |
47DAP/reference | 0.68996 | 0.128 |
52DAP/reference | 1.04658 | 0.636 |
57DAP/reference | 1.2284 | 0.026 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73439 | 0.096 |
17DAP/reference | 0.6713 | 0.018 |
27DAP/reference | 0.66045 | 0.05 |
39DAP/reference | 0.4659 | 0.02 |
41DAP/reference | 0.60463 | 0.005 |
42DAP/reference | 0.67395 | 0.013 |
43DAP/reference | 0.65673 | 0.04 |
47DAP/reference | 0.55416 | 0.009 |
52DAP/reference | 0.34669 | 0.003 |
57DAP/reference | 0.29723 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02924 | 0.918 |
17DAP/reference | 1.32807 | 0.531 |
27DAP/reference | 0.93975 | 0.337 |
39DAP/reference | 0.87701 | 0.076 |
41DAP/reference | 0.89923 | 0.237 |
42DAP/reference | 0.9022 | 0.22 |
43DAP/reference | 1.153 | 0.767 |
47DAP/reference | 0.5738 | 0.008 |
52DAP/reference | 0.89837 | 0.472 |
57DAP/reference | 1.6178 | 0.135 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98892 | 1 |
26DAP/20DAP | 1.05443 | 0.924 |
34DAP/26DAP | 0.91831 | 0.811 |
51DAP/34DAP | 0.4789 | 0.053 |
52DAP/51DAP | 0.93433 | 1 |
53DAP/52DAP | 0.89784 | 0.544 |
55DAP/53DAP | 0.66248 | 0.181 |
57DAP/55DAP | 0.89195 | 0.601 |
62DAP/57DAP | 1.21166 | 0.185 |
68DAP/62DAP | 0.87737 | 0.543 |
68DAP/14DAP | 0.51605 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.60659 | 0.028 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.71154 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.95466 | 0.095 |
Immature Eggplant/Mature Eggplant | 0.55925 | 0.063 |
Ripe Pepper/Ripe Tomato | 2.2756 | 1 |
Mature Eggplant/Ripe Tomato | 5.63575 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.21312 | 1 |
1-1-2/M82 | 1.0398 | 1 |
12-2/M82 | 1.14858 | 1 |
12-4/M82 | 0.87169 | 0.262 |
1-3/M82 | 1.19596 | |
2-1-1/M82 | 1.11923 | |
2-1/M82 | 1.0897 | |
2-6/M82 | 1.02649 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.99243 | |
4-1/M82 | 0.63353 | |
4-3-2/M82 | 0.73738 | 0.445 |
4-3/M82 | 0.84814 | 0.578 |
5-3/M82 | 1.03111 | 1 |
6-2/M82 | 1.39474 | 1 |
6-3/M82 | 1.1589 | 1 |
7-1/M82 | 1.29768 | 0.992 |
7-2/M82 | 1.19999 | 0.385 |
9-3-2/M82 | 0.9412 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.84263 | |
IL7-5/WTpooled | 0.56669 | |
IL7-3/WTpooled | 1.29692 | 1 |
IL12-4/WTpooled | 0.67693 | |
IL1-4/WTpooled | 1.50998 | |
WT/WTpooled | 0.99365 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12128 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.15849 | 0.894 |
DC3000/delta hrp 6h | 1.03859 | 1 |
DC3000/delta hrp 12h | 0.97943 | 1 |
DC3000/delta hrp 24h | 0.72559 | 0.04 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.85936 | 0.085 |
DC3000 delta B/DC3000 delta AB | 0.43904 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99967 | 1 |
Exp 36h | 0.83342 | 0.539 |
Exp 60h | 0.9136 | 0.266 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00837 | 1 |
Var 0h | 0.90097 | 1 |
Var 12h I row2-row1 | 0.95829 | 0.705 |
Var 12h NI row2-row1 | 1.02545 | 1 |
Var 36h I row2-row1 | 0.85727 | 0.805 |
Var 36h NI row2-row1 | 0.97275 | 0.743 |
Var 60h I row2-row1 | 1.34951 | 0.543 |
Var 60h NI row2-row1 | 0.98693 | 1 |
Time course 0hI-0hNI | 0.96859 | 0.829 |
Time course 12hI-12hNI | 1.00901 | 0.885 |
Time course 36hI-36hNI | 0.97679 | 0.426 |
Time course 60hI-60hNI | 0.55482 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09051 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 2.17838 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.0822 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.56616 | 0.112 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.51384 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 8.11633 | 0.09 |
Manapal/WT (break) | 4.42526 | 0.123 |
Manapal/WT (red) | 1.70957 | 0.222 |
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