Expression of 1-1-8.2.18.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.890550.522
27DAP/17DAP0.650340.102
39DAP/27DAP0.820970.474
41DAP/39DAP0.651010.059
42DAP/41DAP1.023821
43DAP/42DAP0.891410.801
47DAP/43DAP0.719640.242
52DAP/47DAP0.851150.539
57DAP/52DAP1.211280.93

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.806730.085
17DAP/reference0.599930.009
27DAP/reference0.524750.013
39DAP/reference0.437860.011
41DAP/reference0.54540.013
42DAP/reference0.576810.001
43DAP/reference0.478740.013
47DAP/reference0.444150.001
52DAP/reference0.424890.014
57DAP/reference0.518420.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.885790.036
27DAP/17DAP0.835690.475
39DAP/27DAP0.446350.028
41DAP/39DAP1.302890.304
42DAP/41DAP0.836260.164
43DAP/42DAP0.657330.026
47DAP/43DAP1.118240.735
52DAP/47DAP0.825890.575
57DAP/52DAP1.75370.346
57DAP/7DAP0.701661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.099780.338
17DAP/reference0.912140.22
27DAP/reference1.049630.804
39DAP/reference1.026431
41DAP/reference1.026030.709
42DAP/reference1.20760.132
43DAP/reference1.239830.015
47DAP/reference0.689960.128
52DAP/reference1.046580.636
57DAP/reference1.22840.026

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.734390.096
17DAP/reference0.67130.018
27DAP/reference0.660450.05
39DAP/reference0.46590.02
41DAP/reference0.604630.005
42DAP/reference0.673950.013
43DAP/reference0.656730.04
47DAP/reference0.554160.009
52DAP/reference0.346690.003
57DAP/reference0.297230.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.029240.918
17DAP/reference1.328070.531
27DAP/reference0.939750.337
39DAP/reference0.877010.076
41DAP/reference0.899230.237
42DAP/reference0.90220.22
43DAP/reference1.1530.767
47DAP/reference0.57380.008
52DAP/reference0.898370.472
57DAP/reference1.61780.135

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.988921
26DAP/20DAP1.054430.924
34DAP/26DAP0.918310.811
51DAP/34DAP0.47890.053
52DAP/51DAP0.934331
53DAP/52DAP0.897840.544
55DAP/53DAP0.662480.181
57DAP/55DAP0.891950.601
62DAP/57DAP1.211660.185
68DAP/62DAP0.877370.543
68DAP/14DAP0.516050.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.606590.028

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.711540.058
Mature Green Tomato/Ripe Tomato1.954660.095
Immature Eggplant/Mature Eggplant0.559250.063
Ripe Pepper/Ripe Tomato2.27561
Mature Eggplant/Ripe Tomato5.635750.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.213121
1-1-2/M821.03981
12-2/M821.148581
12-4/M820.871690.262
1-3/M821.19596
2-1-1/M821.11923
2-1/M821.0897
2-6/M821.02649
3-2/M82N/AN/A
4-1-1/M820.99243
4-1/M820.63353
4-3-2/M820.737380.445
4-3/M820.848140.578
5-3/M821.031111
6-2/M821.394741
6-3/M821.15891
7-1/M821.297680.992
7-2/M821.199990.385
9-3-2/M820.94121

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.84263
IL7-5/WTpooled0.56669
IL7-3/WTpooled1.296921
IL12-4/WTpooled0.67693
IL1-4/WTpooled1.50998
WT/WTpooled0.99365

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.121281

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.158490.894
DC3000/delta hrp 6h1.038591
DC3000/delta hrp 12h0.979431
DC3000/delta hrp 24h0.725590.04

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.859360.085
DC3000 delta B/DC3000 delta AB0.439040.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.999671
Exp 36h0.833420.539
Exp 60h0.91360.266

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008371
Var 0h0.900971
Var 12h I row2-row10.958290.705
Var 12h NI row2-row11.025451
Var 36h I row2-row10.857270.805
Var 36h NI row2-row10.972750.743
Var 60h I row2-row11.349510.543
Var 60h NI row2-row10.986931
Time course 0hI-0hNI0.968590.829
Time course 12hI-12hNI1.009010.885
Time course 36hI-36hNI0.976790.426
Time course 60hI-60hNI0.554820.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.090510.748
transgenic ySAMdc/azygous control (breaker)2.178380.162
transgenic ySAMdc/azygous control (red)1.08220.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.566160.112

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.513840.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)8.116330.09
Manapal/WT (break)4.425260.123
Manapal/WT (red)1.709570.222