Expression of 1-1-8.2.18.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.977320.779
27DAP/17DAP0.89350.763
39DAP/27DAP1.127980.718
41DAP/39DAP1.160850.504
42DAP/41DAP1.267660.898
43DAP/42DAP1.09371
47DAP/43DAP1.111950.825
52DAP/47DAP0.844170.55
57DAP/52DAP0.80630.462

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.541680.025
17DAP/reference0.584350.007
27DAP/reference0.583930.012
39DAP/reference1.185990.857
41DAP/reference0.905060.434
42DAP/reference2.707950.001
43DAP/reference3.661350.006
47DAP/reference2.532220.001
52DAP/reference1.340640.023
57DAP/reference2.04380.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.918360.311
27DAP/17DAP0.978260.878
39DAP/27DAP1.074330.499
41DAP/39DAP1.101680.799
42DAP/41DAP0.969130.734
43DAP/42DAP1.039750.585
47DAP/43DAP1.02110.88
52DAP/47DAP1.006161
57DAP/52DAP1.003611
57DAP/7DAP1.019191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.769880.129
17DAP/reference0.779640.014
27DAP/reference0.741780.01
39DAP/reference0.749180.012
41DAP/reference0.804250.023
42DAP/reference0.769370.035
43DAP/reference0.700830.026
47DAP/reference1.266080.837
52DAP/reference0.711940.013
57DAP/reference0.797450.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.617370.029
17DAP/reference0.534820.006
27DAP/reference0.562820.008
39DAP/reference0.52260.009
41DAP/reference0.573890.01
42DAP/reference0.63670.018
43DAP/reference0.634210.004
47DAP/reference0.992710.543
52DAP/reference0.538390.003
57DAP/reference0.770130.058

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.874950.158
17DAP/reference0.711830.128
27DAP/reference0.728460.034
39DAP/reference0.634310.008
41DAP/reference0.786310.022
42DAP/reference1.321480.923
43DAP/reference2.201140.432
47DAP/reference2.676750.005
52DAP/reference1.70080.705
57DAP/reference1.324130.274

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.096281
26DAP/20DAP0.896740.512
34DAP/26DAP1.060781
51DAP/34DAP1.088040.429
52DAP/51DAP1.030570.651
53DAP/52DAP1.066890.797
55DAP/53DAP0.941930.563
57DAP/55DAP1.008461
62DAP/57DAP1.16080.185
68DAP/62DAP1.297350.523
68DAP/14DAP2.17040.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.878570.166

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.252570.089
Mature Green Tomato/Ripe Tomato1.227940.632
Immature Eggplant/Mature Eggplant0.70580.292
Ripe Pepper/Ripe Tomato5.675361
Mature Eggplant/Ripe Tomato8.599831

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.84560.605
1-1-2/M820.58195
12-2/M821.185231
12-4/M820.92261
1-3/M820.78107
2-1-1/M820.93028
2-1/M820.731350.74
2-6/M820.82609
3-2/M820.80919
4-1-1/M820.995991
4-1/M820.93135
4-3-2/M820.92621
4-3/M820.89496
5-3/M820.957981
6-2/M820.98841
6-3/M82N/AN/A
7-1/M821.36758
7-2/M821.059251
9-3-2/M821.125391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.906381
IL1-4/WTpooled0.87263
WT/WTpooled0.993721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.20410.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.961431
DC3000/delta hrp 6h1.247211
DC3000/delta hrp 12h1.088141
DC3000/delta hrp 24h0.671180.052

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.105920.313
DC3000 delta B/DC3000 delta AB1.201590.212

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.96581
Exp 36h0.837640.406
Exp 60h0.711730.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.971791
Var 0h1.090611
Var 12h I row2-row11.010340.795
Var 12h NI row2-row11.339340.649
Var 36h I row2-row11.074461
Var 36h NI row2-row10.740830.584
Var 60h I row2-row10.82040.285
Var 60h NI row2-row10.743710.292
Time course 0hI-0hNI1.067250.662
Time course 12hI-12hNI1.280440.011
Time course 36hI-36hNI2.680620.004
Time course 60hI-60hNI6.698580.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.564380.246
transgenic ySAMdc/azygous control (breaker)0.839830.49
transgenic ySAMdc/azygous control (red)0.858851

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.025010.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.929110.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.848140.087
Manapal/WT (break)1.403080.381
Manapal/WT (red)1.934830.413