Expression of 1-1-8.2.18.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97732 | 0.779 |
27DAP/17DAP | 0.8935 | 0.763 |
39DAP/27DAP | 1.12798 | 0.718 |
41DAP/39DAP | 1.16085 | 0.504 |
42DAP/41DAP | 1.26766 | 0.898 |
43DAP/42DAP | 1.0937 | 1 |
47DAP/43DAP | 1.11195 | 0.825 |
52DAP/47DAP | 0.84417 | 0.55 |
57DAP/52DAP | 0.8063 | 0.462 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.54168 | 0.025 |
17DAP/reference | 0.58435 | 0.007 |
27DAP/reference | 0.58393 | 0.012 |
39DAP/reference | 1.18599 | 0.857 |
41DAP/reference | 0.90506 | 0.434 |
42DAP/reference | 2.70795 | 0.001 |
43DAP/reference | 3.66135 | 0.006 |
47DAP/reference | 2.53222 | 0.001 |
52DAP/reference | 1.34064 | 0.023 |
57DAP/reference | 2.0438 | 0.014 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91836 | 0.311 |
27DAP/17DAP | 0.97826 | 0.878 |
39DAP/27DAP | 1.07433 | 0.499 |
41DAP/39DAP | 1.10168 | 0.799 |
42DAP/41DAP | 0.96913 | 0.734 |
43DAP/42DAP | 1.03975 | 0.585 |
47DAP/43DAP | 1.0211 | 0.88 |
52DAP/47DAP | 1.00616 | 1 |
57DAP/52DAP | 1.00361 | 1 |
57DAP/7DAP | 1.01919 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76988 | 0.129 |
17DAP/reference | 0.77964 | 0.014 |
27DAP/reference | 0.74178 | 0.01 |
39DAP/reference | 0.74918 | 0.012 |
41DAP/reference | 0.80425 | 0.023 |
42DAP/reference | 0.76937 | 0.035 |
43DAP/reference | 0.70083 | 0.026 |
47DAP/reference | 1.26608 | 0.837 |
52DAP/reference | 0.71194 | 0.013 |
57DAP/reference | 0.79745 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.61737 | 0.029 |
17DAP/reference | 0.53482 | 0.006 |
27DAP/reference | 0.56282 | 0.008 |
39DAP/reference | 0.5226 | 0.009 |
41DAP/reference | 0.57389 | 0.01 |
42DAP/reference | 0.6367 | 0.018 |
43DAP/reference | 0.63421 | 0.004 |
47DAP/reference | 0.99271 | 0.543 |
52DAP/reference | 0.53839 | 0.003 |
57DAP/reference | 0.77013 | 0.058 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87495 | 0.158 |
17DAP/reference | 0.71183 | 0.128 |
27DAP/reference | 0.72846 | 0.034 |
39DAP/reference | 0.63431 | 0.008 |
41DAP/reference | 0.78631 | 0.022 |
42DAP/reference | 1.32148 | 0.923 |
43DAP/reference | 2.20114 | 0.432 |
47DAP/reference | 2.67675 | 0.005 |
52DAP/reference | 1.7008 | 0.705 |
57DAP/reference | 1.32413 | 0.274 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09628 | 1 |
26DAP/20DAP | 0.89674 | 0.512 |
34DAP/26DAP | 1.06078 | 1 |
51DAP/34DAP | 1.08804 | 0.429 |
52DAP/51DAP | 1.03057 | 0.651 |
53DAP/52DAP | 1.06689 | 0.797 |
55DAP/53DAP | 0.94193 | 0.563 |
57DAP/55DAP | 1.00846 | 1 |
62DAP/57DAP | 1.1608 | 0.185 |
68DAP/62DAP | 1.29735 | 0.523 |
68DAP/14DAP | 2.1704 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87857 | 0.166 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.25257 | 0.089 |
Mature Green Tomato/Ripe Tomato | 1.22794 | 0.632 |
Immature Eggplant/Mature Eggplant | 0.7058 | 0.292 |
Ripe Pepper/Ripe Tomato | 5.67536 | 1 |
Mature Eggplant/Ripe Tomato | 8.59983 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.8456 | 0.605 |
1-1-2/M82 | 0.58195 | |
12-2/M82 | 1.18523 | 1 |
12-4/M82 | 0.9226 | 1 |
1-3/M82 | 0.78107 | |
2-1-1/M82 | 0.93028 | |
2-1/M82 | 0.73135 | 0.74 |
2-6/M82 | 0.82609 | |
3-2/M82 | 0.80919 | |
4-1-1/M82 | 0.99599 | 1 |
4-1/M82 | 0.93135 | |
4-3-2/M82 | 0.9262 | 1 |
4-3/M82 | 0.89496 | |
5-3/M82 | 0.95798 | 1 |
6-2/M82 | 0.98841 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.36758 | |
7-2/M82 | 1.05925 | 1 |
9-3-2/M82 | 1.12539 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.90638 | 1 |
IL1-4/WTpooled | 0.87263 | |
WT/WTpooled | 0.99372 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.2041 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96143 | 1 |
DC3000/delta hrp 6h | 1.24721 | 1 |
DC3000/delta hrp 12h | 1.08814 | 1 |
DC3000/delta hrp 24h | 0.67118 | 0.052 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10592 | 0.313 |
DC3000 delta B/DC3000 delta AB | 1.20159 | 0.212 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9658 | 1 |
Exp 36h | 0.83764 | 0.406 |
Exp 60h | 0.71173 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97179 | 1 |
Var 0h | 1.09061 | 1 |
Var 12h I row2-row1 | 1.01034 | 0.795 |
Var 12h NI row2-row1 | 1.33934 | 0.649 |
Var 36h I row2-row1 | 1.07446 | 1 |
Var 36h NI row2-row1 | 0.74083 | 0.584 |
Var 60h I row2-row1 | 0.8204 | 0.285 |
Var 60h NI row2-row1 | 0.74371 | 0.292 |
Time course 0hI-0hNI | 1.06725 | 0.662 |
Time course 12hI-12hNI | 1.28044 | 0.011 |
Time course 36hI-36hNI | 2.68062 | 0.004 |
Time course 60hI-60hNI | 6.69858 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.56438 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 0.83983 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.85885 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02501 | 0.35 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92911 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.84814 | 0.087 |
Manapal/WT (break) | 1.40308 | 0.381 |
Manapal/WT (red) | 1.93483 | 0.413 |
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