Tomato Functional Genomics Database (TFGD)

Expression of 1-1-8.2.18.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.92701	0.568
27DAP/17DAP	1.02488	1
39DAP/27DAP	0.90226	0.507
41DAP/39DAP	1.35754	0.268
42DAP/41DAP	1.06248	1
43DAP/42DAP	0.92402	0.865
47DAP/43DAP	0.87049	0.584
52DAP/47DAP	1.14213	0.662
57DAP/52DAP	1.04975	0.972

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.08796	0.197
17DAP/reference	0.9302	0.169
27DAP/reference	0.94006	0.484
39DAP/reference	0.87349	0.149
41DAP/reference	0.79381	0.018
42DAP/reference	0.91693	0.067
43DAP/reference	0.90494	0.103
47DAP/reference	0.9642	0.242
52DAP/reference	0.97406	0.475
57DAP/reference	1.02482	1

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.21531	0.29
27DAP/17DAP	0.96626	0.782
39DAP/27DAP	1.34532	0.275
41DAP/39DAP	1.08751	0.763
42DAP/41DAP	1.09305	0.916
43DAP/42DAP	0.82763	0.111
47DAP/43DAP	0.99643	0.961
52DAP/47DAP	1.01861	0.965
57DAP/52DAP	1.03461	0.926
57DAP/7DAP	0.90838	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.13659	0.409
17DAP/reference	1.40677	0.007
27DAP/reference	1.13204	0.088
39DAP/reference	1.19549	0.096
41DAP/reference	1.0684	0.745
42DAP/reference	1.1009	0.686
43DAP/reference	1.35053	0.006
47DAP/reference	1.10943	0.885
52DAP/reference	1.31172	0.011
57DAP/reference	1.31152	0.019

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.88048	0.204
17DAP/reference	0.93694	0.347
27DAP/reference	0.8302	0.093
39DAP/reference	1.00955	0.682
41DAP/reference	0.87432	0.105
42DAP/reference	0.86766	0.013
43DAP/reference	0.7836	0.023
47DAP/reference	0.85484	0.042
52DAP/reference	1.02732	1
57DAP/reference	1.05855	0.786

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.20615	0.28
17DAP/reference	1.202	0.522
27DAP/reference	1.83063	0.023
39DAP/reference	1.64387	0.019
41DAP/reference	1.39677	0.018
42DAP/reference	1.20026	0.108
43DAP/reference	1.26202	0.1
47DAP/reference	0.87447	0.06
52DAP/reference	1.53263	0.167
57DAP/reference	0.87892	0.288

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.84279	1
26DAP/20DAP	1.2238	0.433
34DAP/26DAP	0.86127	0.777
51DAP/34DAP	1.28062	0.303
52DAP/51DAP	0.90729	1
53DAP/52DAP	0.99149	0.917
55DAP/53DAP	0.99119	0.864
57DAP/55DAP	1.2249	0.694
62DAP/57DAP	0.95937	0.871
68DAP/62DAP	1.31584	0.31
68DAP/14DAP	1.30998	0.328

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.54445	0.019

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.30792	0.058
Mature Green Tomato/Ripe Tomato	0.83523	0.2
Immature Eggplant/Mature Eggplant	1.33552	0.074
Ripe Pepper/Ripe Tomato	1.38555	1
Mature Eggplant/Ripe Tomato	1.2205	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.90828	0.841
1-1-2/M82	1.01412	1
12-2/M82	0.91488	0.955
12-4/M82	0.83447	0.33
1-3/M82	0.85095	0.501
2-1-1/M82	1.076	0.764
2-1/M82	0.91553	0.74
2-6/M82	1.01251	0.335
3-2/M82	0.99755	1
4-1-1/M82	1.03896	1
4-1/M82	0.83925	0.737
4-3-2/M82	0.97495	1
4-3/M82	1.05262	1
5-3/M82	1.01658	1
6-2/M82	1.00858	1
6-3/M82	0.99918	1
7-1/M82	0.92422	1
7-2/M82	1.05435	1
9-3-2/M82	0.74617	0.355

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.71574	0.247
IL2-6/WTpooled	1.01507	1
IL7-5/WTpooled	1.20374	0.792
IL7-3/WTpooled	0.6839	0.418
IL12-4/WTpooled	1.11814	0.695
IL1-4/WTpooled	0.80634	0.699
WT/WTpooled	1.02385	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.98307	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.00281	1
DC3000/delta hrp 6h	0.87107	0.95
DC3000/delta hrp 12h	1.10875	1
DC3000/delta hrp 24h	1.0036	1

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	1.13904	0.609

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.2638	1
Exp 36h	1.10723	0.693
Exp 60h	1.163	0.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.02652	1
Var 0h	0.86746	1
Var 12h I row2-row1	1.12809	0.613
Var 12h NI row2-row1	1.11633	0.34
Var 36h I row2-row1	1.21637	0.489
Var 36h NI row2-row1	1.04185	1
Var 60h I row2-row1	0.87552	0.285
Var 60h NI row2-row1	0.74289	0.866
Time course 0hI-0hNI	0.95993	0.807
Time course 12hI-12hNI	1.04808	0.709
Time course 36hI-36hNI	1.43605	0.023
Time course 60hI-60hNI	2.80701	0.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.95017	0.324
transgenic ySAMdc/azygous control (breaker)	0.88597	0.173
transgenic ySAMdc/azygous control (red)	0.96397	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.07719	0.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.71526	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.84104	0.172
Manapal/WT (break)	0.98112	1
Manapal/WT (red)	0.90153	0.216