Expression of 1-1-8.2.19.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.842490.159
27DAP/17DAP0.907650.796
39DAP/27DAP0.804060.512
41DAP/39DAP1.206210.814
42DAP/41DAP1.568940.426
43DAP/42DAP1.193730.787
47DAP/43DAP1.075490.463
52DAP/47DAP0.868680.634
57DAP/52DAP1.064050.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.290010.097
17DAP/reference1.293590.068
27DAP/reference1.28420.179
39DAP/reference1.204260.203
41DAP/reference1.937810.017
42DAP/reference1.301520.001
43DAP/reference1.186840.518
47DAP/reference1.221720.006
52DAP/reference1.497070.024
57DAP/reference0.954530.435

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.818650.065
27DAP/17DAP0.977140.878
39DAP/27DAP1.121550.292
41DAP/39DAP0.73720.028
42DAP/41DAP1.102620.526
43DAP/42DAP1.584380.021
47DAP/43DAP0.93790.387
52DAP/47DAP0.937190.71
57DAP/52DAP1.128530.571
57DAP/7DAP1.212440.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.84660.129
17DAP/reference0.827990.024
27DAP/reference0.752460.01
39DAP/reference0.806340.015
41DAP/reference0.881760.094
42DAP/reference1.161290.405
43DAP/reference0.882990.086
47DAP/reference1.288890.115
52DAP/reference0.8180.022
57DAP/reference0.734420.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.206340.203
17DAP/reference1.454840.156
27DAP/reference1.187360.182
39DAP/reference1.169150.783
41DAP/reference1.160650.115
42DAP/reference1.32270.016
43DAP/reference1.50480.023
47DAP/reference1.19670.311
52DAP/reference1.218440.038
57DAP/reference1.055281

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.747480.087
17DAP/reference1.113241
27DAP/reference0.755170.05
39DAP/reference0.733270.033
41DAP/reference0.962710.512
42DAP/reference1.283730.239
43DAP/reference1.204660.223
47DAP/reference1.427780.163
52DAP/reference1.035560.941
57DAP/reference1.204570.255

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.247930.966
26DAP/20DAP0.925511
34DAP/26DAP1.244920.819
51DAP/34DAP0.732350.073
52DAP/51DAP1.23280.323
53DAP/52DAP1.107260.47
55DAP/53DAP1.127450.755
57DAP/55DAP0.820040.452
62DAP/57DAP0.930610.871
68DAP/62DAP1.038720.85
68DAP/14DAP0.614980.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.252550.092

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.622320.06
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.78726
Mature Eggplant/Ripe Tomato0.634940.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.002171
1-1-2/M820.936141
12-2/M821.389490.306
12-4/M821.255430.611
1-3/M820.81325
2-1-1/M821.36054
2-1/M821.14177
2-6/M820.939271
3-2/M821.10002
4-1-1/M820.872320.926
4-1/M82N/AN/A
4-3-2/M821.082591
4-3/M820.88256
5-3/M820.961161
6-2/M820.83978
6-3/M821.000951
7-1/M82N/AN/A
7-2/M820.93351
9-3-2/M820.70266

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.988421
IL2-6/WTpooled0.982191
IL7-5/WTpooled1.291440.792
IL7-3/WTpooled0.934861
IL12-4/WTpooled1.298510.673
IL1-4/WTpooled1.090681
WT/WTpooled1.033591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.05690.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.964821
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.241771
DC3000/delta hrp 24h1.002171

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.076940.556
DC3000 delta B/DC3000 delta AB0.949940.529

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.073151
Var 0h0.918191
Var 12h I row2-row10.909860.514
Var 12h NI row2-row11.04010.649
Var 36h I row2-row11.002141
Var 36h NI row2-row10.918680.584
Var 60h I row2-row11.041531
Var 60h NI row2-row10.870060.38
Time course 0hI-0hNI1.073440.63
Time course 12hI-12hNI1.009450.849
Time course 36hI-36hNI1.032170.513
Time course 60hI-60hNI0.711330.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.92761

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.852230.057

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.977950.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.22081
Manapal/WT (red)1.231120.222