Expression of 1-1-8.2.19.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09477 | 0.798 |
27DAP/17DAP | 1.22355 | 0.819 |
39DAP/27DAP | 1.15068 | 0.759 |
41DAP/39DAP | 0.81369 | 0.461 |
42DAP/41DAP | 1.05936 | 0.978 |
43DAP/42DAP | 0.81387 | 0.669 |
47DAP/43DAP | 0.98161 | 0.835 |
52DAP/47DAP | 1.63397 | 0.498 |
57DAP/52DAP | 1.66099 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1247 | 0.421 |
17DAP/reference | 1.18787 | 0.02 |
27DAP/reference | 1.04463 | 0.709 |
39DAP/reference | 1.17106 | 0.243 |
41DAP/reference | 1.13579 | 0.187 |
42DAP/reference | 1.04644 | 0.523 |
43DAP/reference | 0.97315 | 0.708 |
47DAP/reference | 1.0101 | 1 |
52DAP/reference | 0.93542 | 0.215 |
57DAP/reference | 0.77841 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93753 | 0.484 |
27DAP/17DAP | 0.96764 | 0.887 |
39DAP/27DAP | 1.20675 | 0.353 |
41DAP/39DAP | 0.98171 | 0.997 |
42DAP/41DAP | 1.10585 | 0.861 |
43DAP/42DAP | 1.16581 | 0.147 |
47DAP/43DAP | 1.10401 | 0.765 |
52DAP/47DAP | 1.12654 | 0.689 |
57DAP/52DAP | 0.85643 | 0.277 |
57DAP/7DAP | 1.25055 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08511 | 0.472 |
17DAP/reference | 1.10604 | 0.244 |
27DAP/reference | 1.22412 | 0.107 |
39DAP/reference | 1.14899 | 0.46 |
41DAP/reference | 0.87931 | 0.086 |
42DAP/reference | 0.95523 | 0.393 |
43DAP/reference | 0.98668 | 0.58 |
47DAP/reference | 0.83369 | 0.044 |
52DAP/reference | 0.9654 | 0.435 |
57DAP/reference | 0.98053 | 0.53 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33607 | 0.053 |
17DAP/reference | 1.30147 | 0.025 |
27DAP/reference | 1.23346 | 0.118 |
39DAP/reference | 1.02819 | 0.978 |
41DAP/reference | 0.97598 | 0.459 |
42DAP/reference | 0.96355 | 0.482 |
43DAP/reference | 1.24816 | 0.173 |
47DAP/reference | 0.94298 | 0.311 |
52DAP/reference | 1.17273 | 0.168 |
57DAP/reference | 1.04062 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05191 | 0.56 |
17DAP/reference | 1.05067 | 0.522 |
27DAP/reference | 1.24211 | 0.048 |
39DAP/reference | 1.09288 | 0.33 |
41DAP/reference | 1.01203 | 1 |
42DAP/reference | 1.02425 | 0.961 |
43DAP/reference | 1.10424 | 0.49 |
47DAP/reference | 1.07254 | 0.901 |
52DAP/reference | 1.14539 | 0.463 |
57DAP/reference | 0.78806 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98615 | 1 |
26DAP/20DAP | 0.99642 | 1 |
34DAP/26DAP | 1.19103 | 1 |
51DAP/34DAP | 1.09606 | 0.829 |
52DAP/51DAP | 1.32353 | 0.158 |
53DAP/52DAP | 1.31051 | 0.319 |
55DAP/53DAP | 1.16084 | 0.519 |
57DAP/55DAP | 0.9787 | 0.855 |
62DAP/57DAP | 1.04743 | 0.868 |
68DAP/62DAP | 0.86498 | 0.641 |
68DAP/14DAP | 0.76531 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.8992 | 0.062 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.15087 | 0.417 |
Mature Green Tomato/Ripe Tomato | 1.1255 | 1 |
Immature Eggplant/Mature Eggplant | 1.13453 | 0.222 |
Ripe Pepper/Ripe Tomato | 2.00658 | 1 |
Mature Eggplant/Ripe Tomato | 1.84815 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05317 | 1 |
1-1-2/M82 | 0.93173 | |
12-2/M82 | 0.94542 | 0.955 |
12-4/M82 | 1.0827 | 1 |
1-3/M82 | 0.90899 | |
2-1-1/M82 | 1.12744 | 0.764 |
2-1/M82 | 1.08293 | |
2-6/M82 | 1.07041 | 0.695 |
3-2/M82 | 0.9055 | |
4-1-1/M82 | 0.90699 | 1 |
4-1/M82 | 0.90356 | |
4-3-2/M82 | 1.12056 | |
4-3/M82 | 0.85958 | 0.466 |
5-3/M82 | 1.02879 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.08643 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.90225 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.89606 | 1 |
IL2-6/WTpooled | 1.06641 | 1 |
IL7-5/WTpooled | 1.07078 | 1 |
IL7-3/WTpooled | 1.04 | 1 |
IL12-4/WTpooled | 1.018 | 0.646 |
IL1-4/WTpooled | 1.00658 | 1 |
WT/WTpooled | 0.99559 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97304 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9695 | 1 |
DC3000/delta hrp 6h | 1.165 | 1 |
DC3000/delta hrp 12h | 0.98177 | 1 |
DC3000/delta hrp 24h | 1.10721 | 0.453 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.198 | 0.477 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06743 | 1 |
Exp 36h | 0.87183 | 0.589 |
Exp 60h | 0.98705 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.15455 | 1 |
Var 0h | 1.12339 | 0.98 |
Var 12h I row2-row1 | 1.00936 | 1 |
Var 12h NI row2-row1 | 1.39738 | 1 |
Var 36h I row2-row1 | 1.16935 | 0.41 |
Var 36h NI row2-row1 | 0.91244 | 0.549 |
Var 60h I row2-row1 | 0.90621 | 0.952 |
Var 60h NI row2-row1 | 1.41148 | 0.904 |
Time course 0hI-0hNI | 1.12125 | 0.719 |
Time course 12hI-12hNI | 1.0166 | 1 |
Time course 36hI-36hNI | 0.99803 | 0.742 |
Time course 60hI-60hNI | 1.87855 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93944 | 0.391 |
transgenic ySAMdc/azygous control (breaker) | 1.18107 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.0479 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92201 | 0.034 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.15357 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.09762 | 0.083 |
Manapal/WT (break) | 1.06341 | 1 |
Manapal/WT (red) | 1.35199 | 0.413 |
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