Expression of 1-1-8.2.19.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.094770.798
27DAP/17DAP1.223550.819
39DAP/27DAP1.150680.759
41DAP/39DAP0.813690.461
42DAP/41DAP1.059360.978
43DAP/42DAP0.813870.669
47DAP/43DAP0.981610.835
52DAP/47DAP1.633970.498
57DAP/52DAP1.660990.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.12470.421
17DAP/reference1.187870.02
27DAP/reference1.044630.709
39DAP/reference1.171060.243
41DAP/reference1.135790.187
42DAP/reference1.046440.523
43DAP/reference0.973150.708
47DAP/reference1.01011
52DAP/reference0.935420.215
57DAP/reference0.778410.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.937530.484
27DAP/17DAP0.967640.887
39DAP/27DAP1.206750.353
41DAP/39DAP0.981710.997
42DAP/41DAP1.105850.861
43DAP/42DAP1.165810.147
47DAP/43DAP1.104010.765
52DAP/47DAP1.126540.689
57DAP/52DAP0.856430.277
57DAP/7DAP1.250551

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.085110.472
17DAP/reference1.106040.244
27DAP/reference1.224120.107
39DAP/reference1.148990.46
41DAP/reference0.879310.086
42DAP/reference0.955230.393
43DAP/reference0.986680.58
47DAP/reference0.833690.044
52DAP/reference0.96540.435
57DAP/reference0.980530.53

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.336070.053
17DAP/reference1.301470.025
27DAP/reference1.233460.118
39DAP/reference1.028190.978
41DAP/reference0.975980.459
42DAP/reference0.963550.482
43DAP/reference1.248160.173
47DAP/reference0.942980.311
52DAP/reference1.172730.168
57DAP/reference1.040621

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.051910.56
17DAP/reference1.050670.522
27DAP/reference1.242110.048
39DAP/reference1.092880.33
41DAP/reference1.012031
42DAP/reference1.024250.961
43DAP/reference1.104240.49
47DAP/reference1.072540.901
52DAP/reference1.145390.463
57DAP/reference0.788060.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.986151
26DAP/20DAP0.996421
34DAP/26DAP1.191031
51DAP/34DAP1.096060.829
52DAP/51DAP1.323530.158
53DAP/52DAP1.310510.319
55DAP/53DAP1.160840.519
57DAP/55DAP0.97870.855
62DAP/57DAP1.047430.868
68DAP/62DAP0.864980.641
68DAP/14DAP0.765311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.89920.062

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.150870.417
Mature Green Tomato/Ripe Tomato1.12551
Immature Eggplant/Mature Eggplant1.134530.222
Ripe Pepper/Ripe Tomato2.006581
Mature Eggplant/Ripe Tomato1.848150.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.053171
1-1-2/M820.93173
12-2/M820.945420.955
12-4/M821.08271
1-3/M820.90899
2-1-1/M821.127440.764
2-1/M821.08293
2-6/M821.070410.695
3-2/M820.9055
4-1-1/M820.906991
4-1/M820.90356
4-3-2/M821.12056
4-3/M820.859580.466
5-3/M821.028791
6-2/M82N/AN/A
6-3/M821.086431
7-1/M82N/AN/A
7-2/M820.90225
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.896061
IL2-6/WTpooled1.066411
IL7-5/WTpooled1.070781
IL7-3/WTpooled1.041
IL12-4/WTpooled1.0180.646
IL1-4/WTpooled1.006581
WT/WTpooled0.995591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.97304

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.96951
DC3000/delta hrp 6h1.1651
DC3000/delta hrp 12h0.981771
DC3000/delta hrp 24h1.107210.453

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.1980.477

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.067431
Exp 36h0.871830.589
Exp 60h0.987050.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.154551
Var 0h1.123390.98
Var 12h I row2-row11.009361
Var 12h NI row2-row11.397381
Var 36h I row2-row11.169350.41
Var 36h NI row2-row10.912440.549
Var 60h I row2-row10.906210.952
Var 60h NI row2-row11.411480.904
Time course 0hI-0hNI1.121250.719
Time course 12hI-12hNI1.01661
Time course 36hI-36hNI0.998030.742
Time course 60hI-60hNI1.878550.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.939440.391
transgenic ySAMdc/azygous control (breaker)1.181070.248
transgenic ySAMdc/azygous control (red)1.04790.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.922010.034

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.153570.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.097620.083
Manapal/WT (break)1.063411
Manapal/WT (red)1.351990.413