Expression of 1-1-8.2.19.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.741280.057
27DAP/17DAP0.928230.86
39DAP/27DAP1.155180.725
41DAP/39DAP0.813370.401
42DAP/41DAP1.086650.926
43DAP/42DAP1.095641
47DAP/43DAP0.831210.424
52DAP/47DAP1.377270.407
57DAP/52DAP1.210130.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.992210.011
17DAP/reference1.253980.132
27DAP/reference0.971080.642
39DAP/reference1.13190.044
41DAP/reference1.145150.221
42DAP/reference1.260010.001
43DAP/reference1.036430.705
47DAP/reference1.190680.008
52DAP/reference1.166270.023
57DAP/reference1.035820.901

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.854530.336
27DAP/17DAP0.850970.537
39DAP/27DAP0.840620.334
41DAP/39DAP1.179350.393
42DAP/41DAP1.010530.87
43DAP/42DAP1.030110.83
47DAP/43DAP1.044540.951
52DAP/47DAP0.996160.959
57DAP/52DAP0.755190.494
57DAP/7DAP1.482091

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.9570.024
17DAP/reference1.963310.006
27DAP/reference1.987780.007
39DAP/reference1.068220.411
41DAP/reference1.739090.011
42DAP/reference1.709020.013
43DAP/reference1.84070.012
47DAP/reference1.578470.018
52DAP/reference1.507130.121
57DAP/reference0.870740.128

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.787460.049
17DAP/reference1.608950.018
27DAP/reference1.697560.013
39DAP/reference1.321920.213
41DAP/reference1.542620.008
42DAP/reference1.785860.007
43DAP/reference1.186080.222
47DAP/reference1.285430.035
52DAP/reference1.28770.046
57DAP/reference1.175370.538

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.559610.015
17DAP/reference1.438090.166
27DAP/reference1.868410.013
39DAP/reference1.300650.013
41DAP/reference1.054420.777
42DAP/reference1.141890.459
43DAP/reference1.310570.331
47DAP/reference1.093520.901
52DAP/reference1.013970.854
57DAP/reference1.330650.138

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.840360.915
26DAP/20DAP0.970441
34DAP/26DAP0.878980.682
51DAP/34DAP1.010991
52DAP/51DAP1.241820.054
53DAP/52DAP1.109410.753
55DAP/53DAP1.653090.185
57DAP/55DAP1.385750.559
62DAP/57DAP0.771020.162
68DAP/62DAP1.243970.597
68DAP/14DAP1.397460.074

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.705760.024

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.45880.058
Mature Green Tomato/Ripe Tomato0.897090.377
Immature Eggplant/Mature Eggplant0.842950.125
Ripe Pepper/Ripe Tomato1.246611
Mature Eggplant/Ripe Tomato1.980770.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.882230.944
1-1-2/M821.16771
12-2/M821.650791
12-4/M821.092760.611
1-3/M822.78673
2-1-1/M820.61786
2-1/M820.63489
2-6/M820.78246
3-2/M821.18646
4-1-1/M821.18943
4-1/M821.23384
4-3-2/M821.193131
4-3/M821.324781
5-3/M820.963471
6-2/M823.280610.212
6-3/M820.94684
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.21921

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.60091
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.51092
IL12-4/WTpooled1.50893
IL1-4/WTpooled2.162311
WT/WTpooled1.154241

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.041530.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.064470.921
DC3000/delta hrp 6h0.91890.95
DC3000/delta hrp 12h1.1592
DC3000/delta hrp 24h1.770320.057

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.691930.046
DC3000 delta B/DC3000 delta AB1.091780.535

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.974141
Exp 36h1.064211
Exp 60h0.93960.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.940841
Var 0h1.033920.936
Var 12h I row2-row10.991381
Var 12h NI row2-row10.917530.906
Var 36h I row2-row11.367080.742
Var 36h NI row2-row10.989430.852
Var 60h I row2-row10.891520.582
Var 60h NI row2-row10.757650.359
Time course 0hI-0hNI0.896930.202
Time course 12hI-12hNI1.033370.803
Time course 36hI-36hNI1.143230.453
Time course 60hI-60hNI1.139820.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.130420.325
transgenic ySAMdc/azygous control (breaker)0.740180.173
transgenic ySAMdc/azygous control (red)0.948741

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.910360.149

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.770810.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.079241
Manapal/WT (break)1.070921
Manapal/WT (red)0.854850.424