Expression of 1-1-8.2.19.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.74128 | 0.057 |
27DAP/17DAP | 0.92823 | 0.86 |
39DAP/27DAP | 1.15518 | 0.725 |
41DAP/39DAP | 0.81337 | 0.401 |
42DAP/41DAP | 1.08665 | 0.926 |
43DAP/42DAP | 1.09564 | 1 |
47DAP/43DAP | 0.83121 | 0.424 |
52DAP/47DAP | 1.37727 | 0.407 |
57DAP/52DAP | 1.21013 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.99221 | 0.011 |
17DAP/reference | 1.25398 | 0.132 |
27DAP/reference | 0.97108 | 0.642 |
39DAP/reference | 1.1319 | 0.044 |
41DAP/reference | 1.14515 | 0.221 |
42DAP/reference | 1.26001 | 0.001 |
43DAP/reference | 1.03643 | 0.705 |
47DAP/reference | 1.19068 | 0.008 |
52DAP/reference | 1.16627 | 0.023 |
57DAP/reference | 1.03582 | 0.901 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85453 | 0.336 |
27DAP/17DAP | 0.85097 | 0.537 |
39DAP/27DAP | 0.84062 | 0.334 |
41DAP/39DAP | 1.17935 | 0.393 |
42DAP/41DAP | 1.01053 | 0.87 |
43DAP/42DAP | 1.03011 | 0.83 |
47DAP/43DAP | 1.04454 | 0.951 |
52DAP/47DAP | 0.99616 | 0.959 |
57DAP/52DAP | 0.75519 | 0.494 |
57DAP/7DAP | 1.48209 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 3.957 | 0.024 |
17DAP/reference | 1.96331 | 0.006 |
27DAP/reference | 1.98778 | 0.007 |
39DAP/reference | 1.06822 | 0.411 |
41DAP/reference | 1.73909 | 0.011 |
42DAP/reference | 1.70902 | 0.013 |
43DAP/reference | 1.8407 | 0.012 |
47DAP/reference | 1.57847 | 0.018 |
52DAP/reference | 1.50713 | 0.121 |
57DAP/reference | 0.87074 | 0.128 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.78746 | 0.049 |
17DAP/reference | 1.60895 | 0.018 |
27DAP/reference | 1.69756 | 0.013 |
39DAP/reference | 1.32192 | 0.213 |
41DAP/reference | 1.54262 | 0.008 |
42DAP/reference | 1.78586 | 0.007 |
43DAP/reference | 1.18608 | 0.222 |
47DAP/reference | 1.28543 | 0.035 |
52DAP/reference | 1.2877 | 0.046 |
57DAP/reference | 1.17537 | 0.538 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 3.55961 | 0.015 |
17DAP/reference | 1.43809 | 0.166 |
27DAP/reference | 1.86841 | 0.013 |
39DAP/reference | 1.30065 | 0.013 |
41DAP/reference | 1.05442 | 0.777 |
42DAP/reference | 1.14189 | 0.459 |
43DAP/reference | 1.31057 | 0.331 |
47DAP/reference | 1.09352 | 0.901 |
52DAP/reference | 1.01397 | 0.854 |
57DAP/reference | 1.33065 | 0.138 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.84036 | 0.915 |
26DAP/20DAP | 0.97044 | 1 |
34DAP/26DAP | 0.87898 | 0.682 |
51DAP/34DAP | 1.01099 | 1 |
52DAP/51DAP | 1.24182 | 0.054 |
53DAP/52DAP | 1.10941 | 0.753 |
55DAP/53DAP | 1.65309 | 0.185 |
57DAP/55DAP | 1.38575 | 0.559 |
62DAP/57DAP | 0.77102 | 0.162 |
68DAP/62DAP | 1.24397 | 0.597 |
68DAP/14DAP | 1.39746 | 0.074 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.70576 | 0.024 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.4588 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.89709 | 0.377 |
Immature Eggplant/Mature Eggplant | 0.84295 | 0.125 |
Ripe Pepper/Ripe Tomato | 1.24661 | 1 |
Mature Eggplant/Ripe Tomato | 1.98077 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.88223 | 0.944 |
1-1-2/M82 | 1.16771 | |
12-2/M82 | 1.65079 | 1 |
12-4/M82 | 1.09276 | 0.611 |
1-3/M82 | 2.78673 | |
2-1-1/M82 | 0.61786 | |
2-1/M82 | 0.63489 | |
2-6/M82 | 0.78246 | |
3-2/M82 | 1.18646 | |
4-1-1/M82 | 1.18943 | |
4-1/M82 | 1.23384 | |
4-3-2/M82 | 1.19313 | 1 |
4-3/M82 | 1.32478 | 1 |
5-3/M82 | 0.96347 | 1 |
6-2/M82 | 3.28061 | 0.212 |
6-3/M82 | 0.94684 | |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.21921 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.6009 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.51092 | |
IL12-4/WTpooled | 1.50893 | |
IL1-4/WTpooled | 2.16231 | 1 |
WT/WTpooled | 1.15424 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04153 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06447 | 0.921 |
DC3000/delta hrp 6h | 0.9189 | 0.95 |
DC3000/delta hrp 12h | 1.1592 | |
DC3000/delta hrp 24h | 1.77032 | 0.057 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.69193 | 0.046 |
DC3000 delta B/DC3000 delta AB | 1.09178 | 0.535 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97414 | 1 |
Exp 36h | 1.06421 | 1 |
Exp 60h | 0.9396 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94084 | 1 |
Var 0h | 1.03392 | 0.936 |
Var 12h I row2-row1 | 0.99138 | 1 |
Var 12h NI row2-row1 | 0.91753 | 0.906 |
Var 36h I row2-row1 | 1.36708 | 0.742 |
Var 36h NI row2-row1 | 0.98943 | 0.852 |
Var 60h I row2-row1 | 0.89152 | 0.582 |
Var 60h NI row2-row1 | 0.75765 | 0.359 |
Time course 0hI-0hNI | 0.89693 | 0.202 |
Time course 12hI-12hNI | 1.03337 | 0.803 |
Time course 36hI-36hNI | 1.14323 | 0.453 |
Time course 60hI-60hNI | 1.13982 | 0.08 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13042 | 0.325 |
transgenic ySAMdc/azygous control (breaker) | 0.74018 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.94874 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.91036 | 0.149 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77081 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07924 | 1 |
Manapal/WT (break) | 1.07092 | 1 |
Manapal/WT (red) | 0.85485 | 0.424 |
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