Expression of 1-1-8.2.19.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.949790.683
27DAP/17DAP0.845680.583
39DAP/27DAP1.066911
41DAP/39DAP1.071420.918
42DAP/41DAP1.314270.366
43DAP/42DAP1.112231
47DAP/43DAP0.88550.625
52DAP/47DAP1.186870.718
57DAP/52DAP1.40720.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.083460.303
17DAP/reference1.081160.248
27DAP/reference0.977730.668
39DAP/reference1.038860.581
41DAP/reference1.05070.451
42DAP/reference1.048350.414
43DAP/reference1.056730.287
47DAP/reference1.243860.01
52DAP/reference1.025591
57DAP/reference1.11660.094

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.013280.899
27DAP/17DAP1.165370.523
39DAP/27DAP1.014711
41DAP/39DAP1.073361
42DAP/41DAP1.065410.947
43DAP/42DAP0.909140.415
47DAP/43DAP1.058560.892
52DAP/47DAP0.971660.9
57DAP/52DAP1.155670.282
57DAP/7DAP1.079830.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.895750.157
17DAP/reference0.773610.011
27DAP/reference0.792570.01
39DAP/reference0.742640.011
41DAP/reference0.781140.012
42DAP/reference0.699940.01
43DAP/reference0.655630.011
47DAP/reference1.037281
52DAP/reference0.631050.01
57DAP/reference0.732550.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.972260.607
17DAP/reference0.90730.149
27DAP/reference1.020980.79
39DAP/reference0.98830.569
41DAP/reference1.014920.702
42DAP/reference1.005150.723
43DAP/reference0.937270.404
47DAP/reference1.117670.225
52DAP/reference0.97150.469
57DAP/reference0.974430.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.901050.183
17DAP/reference0.936590.452
27DAP/reference0.79550.073
39DAP/reference0.783040.046
41DAP/reference0.786610.027
42DAP/reference0.780710.059
43DAP/reference0.809280.044
47DAP/reference1.161020.026
52DAP/reference1.010330.704
57DAP/reference1.1110.924

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.267770.786
26DAP/20DAP2.702270.097
34DAP/26DAP0.75870.343
51DAP/34DAP1.194850.271
52DAP/51DAP0.936691
53DAP/52DAP1.041320.662
55DAP/53DAP0.692260.02
57DAP/55DAP0.980.867
62DAP/57DAP1.434150.185
68DAP/62DAP1.243020.405
68DAP/14DAP1.87630.08

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.892370.341

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.605990.137
Mature Green Tomato/Ripe Tomato0.690230.096
Immature Eggplant/Mature Eggplant1.845630.051
Ripe Pepper/Ripe Tomato1.75180.258
Mature Eggplant/Ripe Tomato1.744020.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.63030.526
1-1-2/M821.410281
12-2/M820.941750.955
12-4/M821.114321
1-3/M824.310910.26
2-1-1/M821.063070.689
2-1/M821.252911
2-6/M822.512530.425
3-2/M820.60419
4-1-1/M821.623181
4-1/M82N/AN/A
4-3-2/M823.01545
4-3/M822.659571
5-3/M821.105370.572
6-2/M821.484241
6-3/M821.187341
7-1/M821.502690.992
7-2/M823.624580.291
9-3-2/M822.86256

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.06990.277
IL2-6/WTpooled1.23540.441
IL7-5/WTpooled1.094821
IL7-3/WTpooled0.665060.31
IL12-4/WTpooled0.889010.71
IL1-4/WTpooled1.051481
WT/WTpooled0.968840.873

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.407720.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.950561
DC3000/delta hrp 6h0.952590.95
DC3000/delta hrp 12h0.97481
DC3000/delta hrp 24h1.259870.243

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.269340.057
DC3000 delta B/DC3000 delta AB1.448770.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.982931
Exp 36h1.861880.489
Exp 60h1.610820.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.014471
Var 0h0.721841
Var 12h I row2-row10.888060.565
Var 12h NI row2-row11.586790.281
Var 36h I row2-row11.147351
Var 36h NI row2-row10.687860.382
Var 60h I row2-row10.704450.285
Var 60h NI row2-row10.68310.335
Time course 0hI-0hNI0.989220.943
Time course 12hI-12hNI1.30410.096
Time course 36hI-36hNI3.466490.004
Time course 60hI-60hNI13.93590.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.95520.567
transgenic ySAMdc/azygous control (breaker)0.561390.131
transgenic ySAMdc/azygous control (red)0.97221

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.087320.723

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.361430.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.573190.105
Manapal/WT (break)1.444180.183
Manapal/WT (red)3.044270.134