Expression of 1-1-8.2.19.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94979 | 0.683 |
27DAP/17DAP | 0.84568 | 0.583 |
39DAP/27DAP | 1.06691 | 1 |
41DAP/39DAP | 1.07142 | 0.918 |
42DAP/41DAP | 1.31427 | 0.366 |
43DAP/42DAP | 1.11223 | 1 |
47DAP/43DAP | 0.8855 | 0.625 |
52DAP/47DAP | 1.18687 | 0.718 |
57DAP/52DAP | 1.4072 | 0.784 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08346 | 0.303 |
17DAP/reference | 1.08116 | 0.248 |
27DAP/reference | 0.97773 | 0.668 |
39DAP/reference | 1.03886 | 0.581 |
41DAP/reference | 1.0507 | 0.451 |
42DAP/reference | 1.04835 | 0.414 |
43DAP/reference | 1.05673 | 0.287 |
47DAP/reference | 1.24386 | 0.01 |
52DAP/reference | 1.02559 | 1 |
57DAP/reference | 1.1166 | 0.094 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01328 | 0.899 |
27DAP/17DAP | 1.16537 | 0.523 |
39DAP/27DAP | 1.01471 | 1 |
41DAP/39DAP | 1.07336 | 1 |
42DAP/41DAP | 1.06541 | 0.947 |
43DAP/42DAP | 0.90914 | 0.415 |
47DAP/43DAP | 1.05856 | 0.892 |
52DAP/47DAP | 0.97166 | 0.9 |
57DAP/52DAP | 1.15567 | 0.282 |
57DAP/7DAP | 1.07983 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89575 | 0.157 |
17DAP/reference | 0.77361 | 0.011 |
27DAP/reference | 0.79257 | 0.01 |
39DAP/reference | 0.74264 | 0.011 |
41DAP/reference | 0.78114 | 0.012 |
42DAP/reference | 0.69994 | 0.01 |
43DAP/reference | 0.65563 | 0.011 |
47DAP/reference | 1.03728 | 1 |
52DAP/reference | 0.63105 | 0.01 |
57DAP/reference | 0.73255 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97226 | 0.607 |
17DAP/reference | 0.9073 | 0.149 |
27DAP/reference | 1.02098 | 0.79 |
39DAP/reference | 0.9883 | 0.569 |
41DAP/reference | 1.01492 | 0.702 |
42DAP/reference | 1.00515 | 0.723 |
43DAP/reference | 0.93727 | 0.404 |
47DAP/reference | 1.11767 | 0.225 |
52DAP/reference | 0.9715 | 0.469 |
57DAP/reference | 0.97443 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90105 | 0.183 |
17DAP/reference | 0.93659 | 0.452 |
27DAP/reference | 0.7955 | 0.073 |
39DAP/reference | 0.78304 | 0.046 |
41DAP/reference | 0.78661 | 0.027 |
42DAP/reference | 0.78071 | 0.059 |
43DAP/reference | 0.80928 | 0.044 |
47DAP/reference | 1.16102 | 0.026 |
52DAP/reference | 1.01033 | 0.704 |
57DAP/reference | 1.111 | 0.924 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.26777 | 0.786 |
26DAP/20DAP | 2.70227 | 0.097 |
34DAP/26DAP | 0.7587 | 0.343 |
51DAP/34DAP | 1.19485 | 0.271 |
52DAP/51DAP | 0.93669 | 1 |
53DAP/52DAP | 1.04132 | 0.662 |
55DAP/53DAP | 0.69226 | 0.02 |
57DAP/55DAP | 0.98 | 0.867 |
62DAP/57DAP | 1.43415 | 0.185 |
68DAP/62DAP | 1.24302 | 0.405 |
68DAP/14DAP | 1.8763 | 0.08 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89237 | 0.341 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.60599 | 0.137 |
Mature Green Tomato/Ripe Tomato | 0.69023 | 0.096 |
Immature Eggplant/Mature Eggplant | 1.84563 | 0.051 |
Ripe Pepper/Ripe Tomato | 1.7518 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.74402 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.6303 | 0.526 |
1-1-2/M82 | 1.41028 | 1 |
12-2/M82 | 0.94175 | 0.955 |
12-4/M82 | 1.11432 | 1 |
1-3/M82 | 4.31091 | 0.26 |
2-1-1/M82 | 1.06307 | 0.689 |
2-1/M82 | 1.25291 | 1 |
2-6/M82 | 2.51253 | 0.425 |
3-2/M82 | 0.60419 | |
4-1-1/M82 | 1.62318 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 3.01545 | |
4-3/M82 | 2.65957 | 1 |
5-3/M82 | 1.10537 | 0.572 |
6-2/M82 | 1.48424 | 1 |
6-3/M82 | 1.18734 | 1 |
7-1/M82 | 1.50269 | 0.992 |
7-2/M82 | 3.62458 | 0.291 |
9-3-2/M82 | 2.86256 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0699 | 0.277 |
IL2-6/WTpooled | 1.2354 | 0.441 |
IL7-5/WTpooled | 1.09482 | 1 |
IL7-3/WTpooled | 0.66506 | 0.31 |
IL12-4/WTpooled | 0.88901 | 0.71 |
IL1-4/WTpooled | 1.05148 | 1 |
WT/WTpooled | 0.96884 | 0.873 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.40772 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95056 | 1 |
DC3000/delta hrp 6h | 0.95259 | 0.95 |
DC3000/delta hrp 12h | 0.9748 | 1 |
DC3000/delta hrp 24h | 1.25987 | 0.243 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.26934 | 0.057 |
DC3000 delta B/DC3000 delta AB | 1.44877 | 0.081 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98293 | 1 |
Exp 36h | 1.86188 | 0.489 |
Exp 60h | 1.61082 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01447 | 1 |
Var 0h | 0.72184 | 1 |
Var 12h I row2-row1 | 0.88806 | 0.565 |
Var 12h NI row2-row1 | 1.58679 | 0.281 |
Var 36h I row2-row1 | 1.14735 | 1 |
Var 36h NI row2-row1 | 0.68786 | 0.382 |
Var 60h I row2-row1 | 0.70445 | 0.285 |
Var 60h NI row2-row1 | 0.6831 | 0.335 |
Time course 0hI-0hNI | 0.98922 | 0.943 |
Time course 12hI-12hNI | 1.3041 | 0.096 |
Time course 36hI-36hNI | 3.46649 | 0.004 |
Time course 60hI-60hNI | 13.9359 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9552 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.56139 | 0.131 |
transgenic ySAMdc/azygous control (red) | 0.9722 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08732 | 0.723 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.36143 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.57319 | 0.105 |
Manapal/WT (break) | 1.44418 | 0.183 |
Manapal/WT (red) | 3.04427 | 0.134 |
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