Expression of 1-1-8.2.2.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.953440.652
27DAP/17DAP1.10370.849
39DAP/27DAP0.990540.798
41DAP/39DAP0.86380.424
42DAP/41DAP0.8780.774
43DAP/42DAP1.073660.991
47DAP/43DAP1.195650.68
52DAP/47DAP0.972440.908
57DAP/52DAP0.982850.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.998590.771
17DAP/reference0.992230.904
27DAP/reference0.992440.779
39DAP/reference0.93430.128
41DAP/reference0.98660.814
42DAP/reference1.050920.2
43DAP/reference1.049280.596
47DAP/reference0.978460.473
52DAP/reference1.009241
57DAP/reference1.001321

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.932870.363
27DAP/17DAP1.053160.887
39DAP/27DAP0.991781
41DAP/39DAP0.980950.968
42DAP/41DAP1.023990.984
43DAP/42DAP1.047460.478
47DAP/43DAP0.987240.933
52DAP/47DAP0.973040.902
57DAP/52DAP0.965930.537
57DAP/7DAP0.925641

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.023310.843
17DAP/reference0.855290.014
27DAP/reference0.848040.017
39DAP/reference0.878160.016
41DAP/reference1.00260.778
42DAP/reference0.929590.289
43DAP/reference0.841110.016
47DAP/reference0.834330.05
52DAP/reference0.838650.077
57DAP/reference0.802430.033

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.043910.605
17DAP/reference1.15980.072
27DAP/reference1.090350.437
39DAP/reference1.00681
41DAP/reference0.969960.451
42DAP/reference0.970840.433
43DAP/reference0.974970.581
47DAP/reference0.948960.284
52DAP/reference0.973590.327
57DAP/reference0.972160.488

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.96560.249
17DAP/reference0.959910.417
27DAP/reference0.844240.031
39DAP/reference0.876220.054
41DAP/reference0.961250.293
42DAP/reference0.812310.02
43DAP/reference0.876310.046
47DAP/reference0.93750.199
52DAP/reference0.773820.155
57DAP/reference0.941510.31

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.989341
26DAP/20DAP1.004931
34DAP/26DAP0.964390.763
51DAP/34DAP1.035010.759
52DAP/51DAP0.992741
53DAP/52DAP1.01402
55DAP/53DAPN/AN/A
57DAP/55DAP0.943040.783
62DAP/57DAP0.63169
68DAP/62DAP0.996470.939
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.937590.253

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.081420.058
Mature Green Tomato/Ripe Tomato1.142230.69
Immature Eggplant/Mature Eggplant0.720330.075
Ripe Pepper/Ripe Tomato3.508490.258
Mature Eggplant/Ripe Tomato4.00950.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.973780.944
1-1-2/M820.969130.958
12-2/M820.952870.955
12-4/M820.999551
1-3/M820.959190.501
2-1-1/M820.871650.565
2-1/M821.382821
2-6/M820.879761
3-2/M821.09526
4-1-1/M821.006921
4-1/M820.981141
4-3-2/M820.815730.487
4-3/M820.940321
5-3/M820.992481
6-2/M820.949531
6-3/M821.051711
7-1/M820.993721
7-2/M820.929830.796
9-3-2/M820.879450.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.53920.348
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.000271
IL12-4/WTpooled0.616720.554
IL1-4/WTpooled0.86708
WT/WTpooled1.035611

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.971661

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.884680.502
DC3000/delta hrp 6h0.92410.95
DC3000/delta hrp 12h0.884831
DC3000/delta hrp 24h1.05030.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.89823
DC3000 delta B/DC3000 delta AB0.922360.189

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.023741
Exp 36h0.807750.623
Exp 60h0.790450.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002631
Var 0h0.549450.936
Var 12h I row2-row11.075960.654
Var 12h NI row2-row11.009791
Var 36h I row2-row10.978621
Var 36h NI row2-row11.036441
Var 60h I row2-row11.012161
Var 60h NI row2-row11.070520.904
Time course 0hI-0hNI0.997891
Time course 12hI-12hNI0.942850.407
Time course 36hI-36hNI0.908350.102
Time course 60hI-60hNI0.612980.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.966970.428
transgenic ySAMdc/azygous control (breaker)1.210831
transgenic ySAMdc/azygous control (red)1.309910.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.958620.214

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.992970.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.935410.083
Manapal/WT (break)3.371180.14
Manapal/WT (red)2.291170.142