Expression of 1-1-8.2.2.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95344 | 0.652 |
27DAP/17DAP | 1.1037 | 0.849 |
39DAP/27DAP | 0.99054 | 0.798 |
41DAP/39DAP | 0.8638 | 0.424 |
42DAP/41DAP | 0.878 | 0.774 |
43DAP/42DAP | 1.07366 | 0.991 |
47DAP/43DAP | 1.19565 | 0.68 |
52DAP/47DAP | 0.97244 | 0.908 |
57DAP/52DAP | 0.98285 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99859 | 0.771 |
17DAP/reference | 0.99223 | 0.904 |
27DAP/reference | 0.99244 | 0.779 |
39DAP/reference | 0.9343 | 0.128 |
41DAP/reference | 0.9866 | 0.814 |
42DAP/reference | 1.05092 | 0.2 |
43DAP/reference | 1.04928 | 0.596 |
47DAP/reference | 0.97846 | 0.473 |
52DAP/reference | 1.00924 | 1 |
57DAP/reference | 1.00132 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93287 | 0.363 |
27DAP/17DAP | 1.05316 | 0.887 |
39DAP/27DAP | 0.99178 | 1 |
41DAP/39DAP | 0.98095 | 0.968 |
42DAP/41DAP | 1.02399 | 0.984 |
43DAP/42DAP | 1.04746 | 0.478 |
47DAP/43DAP | 0.98724 | 0.933 |
52DAP/47DAP | 0.97304 | 0.902 |
57DAP/52DAP | 0.96593 | 0.537 |
57DAP/7DAP | 0.92564 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02331 | 0.843 |
17DAP/reference | 0.85529 | 0.014 |
27DAP/reference | 0.84804 | 0.017 |
39DAP/reference | 0.87816 | 0.016 |
41DAP/reference | 1.0026 | 0.778 |
42DAP/reference | 0.92959 | 0.289 |
43DAP/reference | 0.84111 | 0.016 |
47DAP/reference | 0.83433 | 0.05 |
52DAP/reference | 0.83865 | 0.077 |
57DAP/reference | 0.80243 | 0.033 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04391 | 0.605 |
17DAP/reference | 1.1598 | 0.072 |
27DAP/reference | 1.09035 | 0.437 |
39DAP/reference | 1.0068 | 1 |
41DAP/reference | 0.96996 | 0.451 |
42DAP/reference | 0.97084 | 0.433 |
43DAP/reference | 0.97497 | 0.581 |
47DAP/reference | 0.94896 | 0.284 |
52DAP/reference | 0.97359 | 0.327 |
57DAP/reference | 0.97216 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9656 | 0.249 |
17DAP/reference | 0.95991 | 0.417 |
27DAP/reference | 0.84424 | 0.031 |
39DAP/reference | 0.87622 | 0.054 |
41DAP/reference | 0.96125 | 0.293 |
42DAP/reference | 0.81231 | 0.02 |
43DAP/reference | 0.87631 | 0.046 |
47DAP/reference | 0.9375 | 0.199 |
52DAP/reference | 0.77382 | 0.155 |
57DAP/reference | 0.94151 | 0.31 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98934 | 1 |
26DAP/20DAP | 1.00493 | 1 |
34DAP/26DAP | 0.96439 | 0.763 |
51DAP/34DAP | 1.03501 | 0.759 |
52DAP/51DAP | 0.99274 | 1 |
53DAP/52DAP | 1.01402 | |
55DAP/53DAP | N/A | N/A |
57DAP/55DAP | 0.94304 | 0.783 |
62DAP/57DAP | 0.63169 | |
68DAP/62DAP | 0.99647 | 0.939 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93759 | 0.253 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.08142 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.14223 | 0.69 |
Immature Eggplant/Mature Eggplant | 0.72033 | 0.075 |
Ripe Pepper/Ripe Tomato | 3.50849 | 0.258 |
Mature Eggplant/Ripe Tomato | 4.0095 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97378 | 0.944 |
1-1-2/M82 | 0.96913 | 0.958 |
12-2/M82 | 0.95287 | 0.955 |
12-4/M82 | 0.99955 | 1 |
1-3/M82 | 0.95919 | 0.501 |
2-1-1/M82 | 0.87165 | 0.565 |
2-1/M82 | 1.38282 | 1 |
2-6/M82 | 0.87976 | 1 |
3-2/M82 | 1.09526 | |
4-1-1/M82 | 1.00692 | 1 |
4-1/M82 | 0.98114 | 1 |
4-3-2/M82 | 0.81573 | 0.487 |
4-3/M82 | 0.94032 | 1 |
5-3/M82 | 0.99248 | 1 |
6-2/M82 | 0.94953 | 1 |
6-3/M82 | 1.05171 | 1 |
7-1/M82 | 0.99372 | 1 |
7-2/M82 | 0.92983 | 0.796 |
9-3-2/M82 | 0.87945 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.5392 | 0.348 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.00027 | 1 |
IL12-4/WTpooled | 0.61672 | 0.554 |
IL1-4/WTpooled | 0.86708 | |
WT/WTpooled | 1.03561 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97166 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.88468 | 0.502 |
DC3000/delta hrp 6h | 0.9241 | 0.95 |
DC3000/delta hrp 12h | 0.88483 | 1 |
DC3000/delta hrp 24h | 1.0503 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.89823 | |
DC3000 delta B/DC3000 delta AB | 0.92236 | 0.189 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02374 | 1 |
Exp 36h | 0.80775 | 0.623 |
Exp 60h | 0.79045 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00263 | 1 |
Var 0h | 0.54945 | 0.936 |
Var 12h I row2-row1 | 1.07596 | 0.654 |
Var 12h NI row2-row1 | 1.00979 | 1 |
Var 36h I row2-row1 | 0.97862 | 1 |
Var 36h NI row2-row1 | 1.03644 | 1 |
Var 60h I row2-row1 | 1.01216 | 1 |
Var 60h NI row2-row1 | 1.07052 | 0.904 |
Time course 0hI-0hNI | 0.99789 | 1 |
Time course 12hI-12hNI | 0.94285 | 0.407 |
Time course 36hI-36hNI | 0.90835 | 0.102 |
Time course 60hI-60hNI | 0.61298 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96697 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 1.21083 | 1 |
transgenic ySAMdc/azygous control (red) | 1.30991 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95862 | 0.214 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.99297 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.93541 | 0.083 |
Manapal/WT (break) | 3.37118 | 0.14 |
Manapal/WT (red) | 2.29117 | 0.142 |
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