Expression of 1-1-8.2.2.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.0320.858
27DAP/17DAP0.961040.952
39DAP/27DAP0.933920.583
41DAP/39DAP1.308690.464
42DAP/41DAP0.989811
43DAP/42DAP0.783030.713
47DAP/43DAP1.680290.448
52DAP/47DAP1.671730.541
57DAP/52DAP0.985840.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.893890.045
17DAP/reference0.890410.069
27DAP/reference0.947310.484
39DAP/reference0.863210.014
41DAP/reference0.782090.021
42DAP/reference0.803480.002
43DAP/reference0.830680.023
47DAP/reference0.821740.008
52DAP/reference0.984780.515
57DAP/reference1.03130.853

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.096290.75
27DAP/17DAP1.065580.909
39DAP/27DAP1.208780.532
41DAP/39DAP1.056551
42DAP/41DAP1.13391
43DAP/42DAP1.107480.585
47DAP/43DAP0.934620.764
52DAP/47DAP1.022920.933
57DAP/52DAP0.946110.737
57DAP/7DAP0.850871

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.183580.286
17DAP/reference1.497490.049
27DAP/reference1.058970.974
39DAP/reference0.982920.552
41DAP/reference1.033630.864
42DAP/reference1.170030.174
43DAP/reference1.230070.148
47DAP/reference1.071031
52DAP/reference0.989890.679
57DAP/reference1.06010.966

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.9080.286
17DAP/reference0.846560.015
27DAP/reference0.888770.203
39DAP/reference0.710590.008
41DAP/reference0.788640.035
42DAP/reference0.850190.067
43DAP/reference0.830680.114
47DAP/reference0.824180.03
52DAP/reference0.782460.021
57DAP/reference0.876240.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.060480.397
17DAP/reference1.09310.522
27DAP/reference1.34250.198
39DAP/reference1.143160.203
41DAP/reference1.176020.249
42DAP/reference1.075470.612
43DAP/reference1.052630.767
47DAP/reference0.694120.004
52DAP/reference0.707760.139
57DAP/reference0.869610.102

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.91421
26DAP/20DAP0.73064
34DAP/26DAP0.705490.399
51DAP/34DAP1.63186
52DAP/51DAP0.773311
53DAP/52DAP0.988320.924
55DAP/53DAP3.806510.703
57DAP/55DAP1.153680.694
62DAP/57DAP2.50524
68DAP/62DAP1.089930.971
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.070441

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.71597
Mature Green Tomato/Ripe Tomato1.33579
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.706911
Mature Eggplant/Ripe Tomato0.37813

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.920930.961
1-1-2/M821.45396
12-2/M821.35723
12-4/M820.936551
1-3/M821.019761
2-1-1/M820.87348
2-1/M82N/AN/A
2-6/M820.946991
3-2/M821.07814
4-1-1/M821.083471
4-1/M821.57729
4-3-2/M821.03954
4-3/M821.11586
5-3/M821.07111
6-2/M82N/AN/A
6-3/M820.83466
7-1/M821.00029
7-2/M821.20347
9-3-2/M820.71488

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.766631
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.186191
IL12-4/WTpooled1.150750.737
IL1-4/WTpooled1.0452
WT/WTpooled0.989551

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.961611

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.03790.921
DC3000/delta hrp 6h0.948210.95
DC3000/delta hrp 12h0.881461
DC3000/delta hrp 24h1.069890.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.019551
Exp 36h0.737550.471
Exp 60h0.736530.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.012171
Var 0h0.941141
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row11.006311
Var 36h I row2-row11.0619
Var 36h NI row2-row11.014531
Var 60h I row2-row10.94704
Var 60h NI row2-row11.04981
Time course 0hI-0hNI0.951080.817
Time course 12hI-12hNI1.024210.816
Time course 36hI-36hNI1.315170.355
Time course 60hI-60hNI0.711390.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.927140.213
transgenic ySAMdc/azygous control (breaker)1.340290.178
transgenic ySAMdc/azygous control (red)1.040170.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.917370.12

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.073710.223

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.008270.083
Manapal/WT (break)1.498840.126
Manapal/WT (red)1.107750.413