Expression of 1-1-8.2.2.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.337340.014
27DAP/17DAP0.451040.031
39DAP/27DAP0.625310.378
41DAP/39DAP0.709220.188
42DAP/41DAP0.613490.774
43DAP/42DAP1.17821
47DAP/43DAP1.112940.926
52DAP/47DAP1.069290.823
57DAP/52DAP1.166440.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.976160.043
17DAP/reference1.474610.014
27DAP/reference1.850980.014
39DAP/reference0.746630.009
41DAP/reference0.632580.008
42DAP/reference0.819660.001
43DAP/reference0.689860.019
47DAP/reference0.642760.001
52DAP/reference0.643110.015
57DAP/reference0.900480.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.327420.027
27DAP/17DAP1.00541
39DAP/27DAP0.768750.06
41DAP/39DAP0.594940.041
42DAP/41DAP0.975950.797
43DAP/42DAP1.131940.585
47DAP/43DAP0.898350.332
52DAP/47DAP1.253030.823
57DAP/52DAP1.216560.718
57DAP/7DAP0.301730.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.875060.024
17DAP/reference1.400830.199
27DAP/reference1.036470.698
39DAP/reference1.21350.036
41DAP/reference1.10160.812
42DAP/reference1.143010.534
43DAP/reference0.902480.086
47DAP/reference0.64370.04
52DAP/reference1.204750.062
57DAP/reference1.064980.308

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.590650.122
17DAP/reference1.491110.032
27DAP/reference0.968330.467
39DAP/reference0.572060.008
41DAP/reference0.618110.007
42DAP/reference0.967230.482
43DAP/reference0.77880.08
47DAP/reference0.721850.029
52DAP/reference0.634090.005
57DAP/reference0.735430.028

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.039560.019
17DAP/reference1.694740.037
27DAP/reference1.266510.022
39DAP/reference1.373510.437
41DAP/reference1.14160.605
42DAP/reference0.979030.816
43DAP/reference1.018620.545
47DAP/reference0.506270.004
52DAP/reference0.760010.228
57DAP/reference0.86030.12

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.137440.966
26DAP/20DAP1.340790.21
34DAP/26DAP0.854880.247
51DAP/34DAP0.603580.053
52DAP/51DAP0.865460.151
53DAP/52DAP0.742670.08
55DAP/53DAP0.614310.023
57DAP/55DAP0.562420.019
62DAP/57DAPN/AN/A
68DAP/62DAP0.776290.345
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.126080.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.326920.068
Mature Green Tomato/Ripe Tomato7.558570.015
Immature Eggplant/Mature Eggplant0.429710.062
Ripe Pepper/Ripe Tomato57.91470.258
Mature Eggplant/Ripe Tomato149.7630.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.20612
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.1611
1-3/M820.989951
2-1-1/M820.55663
2-1/M82N/AN/A
2-6/M821.013861
3-2/M82N/AN/A
4-1-1/M820.925721
4-1/M822.23617
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.945821
6-2/M82N/AN/A
6-3/M821.068530.971
7-1/M820.86812
7-2/M820.908260.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.899310.337
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.886831
IL12-4/WTpooled0.928131
IL1-4/WTpooled1.01279
WT/WTpooled0.931771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.722160.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.990171
DC3000/delta hrp 6h0.987020.95
DC3000/delta hrp 12h1.164991
DC3000/delta hrp 24h0.778580.174

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.374330.023
DC3000 delta B/DC3000 delta AB0.400120.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.989851
Exp 36h0.684420.434
Exp 60h0.628330.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.976381
Var 0h0.52640.226
Var 12h I row2-row10.812180.31
Var 12h NI row2-row10.806040.494
Var 36h I row2-row10.974921
Var 36h NI row2-row11.202171
Var 60h I row2-row11.04622
Var 60h NI row2-row11.03870.904
Time course 0hI-0hNI0.970340.866
Time course 12hI-12hNI0.861910.149
Time course 36hI-36hNI0.717320.023
Time course 60hI-60hNI0.079820.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.749880.338
transgenic ySAMdc/azygous control (breaker)1.455240.248
transgenic ySAMdc/azygous control (red)0.909721

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.876530.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt3.841740.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.385920.14
Manapal/WT (break)2.230.14
Manapal/WT (red)1.08951