Expression of 1-1-8.2.2.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.33734 | 0.014 |
27DAP/17DAP | 0.45104 | 0.031 |
39DAP/27DAP | 0.62531 | 0.378 |
41DAP/39DAP | 0.70922 | 0.188 |
42DAP/41DAP | 0.61349 | 0.774 |
43DAP/42DAP | 1.1782 | 1 |
47DAP/43DAP | 1.11294 | 0.926 |
52DAP/47DAP | 1.06929 | 0.823 |
57DAP/52DAP | 1.16644 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.97616 | 0.043 |
17DAP/reference | 1.47461 | 0.014 |
27DAP/reference | 1.85098 | 0.014 |
39DAP/reference | 0.74663 | 0.009 |
41DAP/reference | 0.63258 | 0.008 |
42DAP/reference | 0.81966 | 0.001 |
43DAP/reference | 0.68986 | 0.019 |
47DAP/reference | 0.64276 | 0.001 |
52DAP/reference | 0.64311 | 0.015 |
57DAP/reference | 0.90048 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.32742 | 0.027 |
27DAP/17DAP | 1.0054 | 1 |
39DAP/27DAP | 0.76875 | 0.06 |
41DAP/39DAP | 0.59494 | 0.041 |
42DAP/41DAP | 0.97595 | 0.797 |
43DAP/42DAP | 1.13194 | 0.585 |
47DAP/43DAP | 0.89835 | 0.332 |
52DAP/47DAP | 1.25303 | 0.823 |
57DAP/52DAP | 1.21656 | 0.718 |
57DAP/7DAP | 0.30173 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.87506 | 0.024 |
17DAP/reference | 1.40083 | 0.199 |
27DAP/reference | 1.03647 | 0.698 |
39DAP/reference | 1.2135 | 0.036 |
41DAP/reference | 1.1016 | 0.812 |
42DAP/reference | 1.14301 | 0.534 |
43DAP/reference | 0.90248 | 0.086 |
47DAP/reference | 0.6437 | 0.04 |
52DAP/reference | 1.20475 | 0.062 |
57DAP/reference | 1.06498 | 0.308 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.59065 | 0.122 |
17DAP/reference | 1.49111 | 0.032 |
27DAP/reference | 0.96833 | 0.467 |
39DAP/reference | 0.57206 | 0.008 |
41DAP/reference | 0.61811 | 0.007 |
42DAP/reference | 0.96723 | 0.482 |
43DAP/reference | 0.7788 | 0.08 |
47DAP/reference | 0.72185 | 0.029 |
52DAP/reference | 0.63409 | 0.005 |
57DAP/reference | 0.73543 | 0.028 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.03956 | 0.019 |
17DAP/reference | 1.69474 | 0.037 |
27DAP/reference | 1.26651 | 0.022 |
39DAP/reference | 1.37351 | 0.437 |
41DAP/reference | 1.1416 | 0.605 |
42DAP/reference | 0.97903 | 0.816 |
43DAP/reference | 1.01862 | 0.545 |
47DAP/reference | 0.50627 | 0.004 |
52DAP/reference | 0.76001 | 0.228 |
57DAP/reference | 0.8603 | 0.12 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13744 | 0.966 |
26DAP/20DAP | 1.34079 | 0.21 |
34DAP/26DAP | 0.85488 | 0.247 |
51DAP/34DAP | 0.60358 | 0.053 |
52DAP/51DAP | 0.86546 | 0.151 |
53DAP/52DAP | 0.74267 | 0.08 |
55DAP/53DAP | 0.61431 | 0.023 |
57DAP/55DAP | 0.56242 | 0.019 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 0.77629 | 0.345 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.12608 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.32692 | 0.068 |
Mature Green Tomato/Ripe Tomato | 7.55857 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.42971 | 0.062 |
Ripe Pepper/Ripe Tomato | 57.9147 | 0.258 |
Mature Eggplant/Ripe Tomato | 149.763 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.20612 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.1611 | |
1-3/M82 | 0.98995 | 1 |
2-1-1/M82 | 0.55663 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.01386 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.92572 | 1 |
4-1/M82 | 2.23617 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.94582 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.06853 | 0.971 |
7-1/M82 | 0.86812 | |
7-2/M82 | 0.90826 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.89931 | 0.337 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.88683 | 1 |
IL12-4/WTpooled | 0.92813 | 1 |
IL1-4/WTpooled | 1.01279 | |
WT/WTpooled | 0.93177 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.72216 | 0.341 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99017 | 1 |
DC3000/delta hrp 6h | 0.98702 | 0.95 |
DC3000/delta hrp 12h | 1.16499 | 1 |
DC3000/delta hrp 24h | 0.77858 | 0.174 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.37433 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.40012 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98985 | 1 |
Exp 36h | 0.68442 | 0.434 |
Exp 60h | 0.62833 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97638 | 1 |
Var 0h | 0.5264 | 0.226 |
Var 12h I row2-row1 | 0.81218 | 0.31 |
Var 12h NI row2-row1 | 0.80604 | 0.494 |
Var 36h I row2-row1 | 0.97492 | 1 |
Var 36h NI row2-row1 | 1.20217 | 1 |
Var 60h I row2-row1 | 1.04622 | |
Var 60h NI row2-row1 | 1.0387 | 0.904 |
Time course 0hI-0hNI | 0.97034 | 0.866 |
Time course 12hI-12hNI | 0.86191 | 0.149 |
Time course 36hI-36hNI | 0.71732 | 0.023 |
Time course 60hI-60hNI | 0.07982 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.74988 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 1.45524 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.90972 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.87653 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 3.84174 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.38592 | 0.14 |
Manapal/WT (break) | 2.23 | 0.14 |
Manapal/WT (red) | 1.0895 | 1 |
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