Expression of 1-1-8.2.2.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01804 | 0.997 |
27DAP/17DAP | 0.9595 | 0.958 |
39DAP/27DAP | 0.95622 | 0.652 |
41DAP/39DAP | 1.18127 | 0.549 |
42DAP/41DAP | 0.98947 | 1 |
43DAP/42DAP | 0.90298 | 0.867 |
47DAP/43DAP | 1.05344 | 0.873 |
52DAP/47DAP | 1.3777 | 0.549 |
57DAP/52DAP | 0.94104 | 0.926 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16882 | 0.366 |
17DAP/reference | 1.1197 | 0.399 |
27DAP/reference | 1.08114 | 0.384 |
39DAP/reference | 1.04606 | 0.615 |
41DAP/reference | 1.05491 | 0.393 |
42DAP/reference | 1.18873 | 0.055 |
43DAP/reference | 1.04776 | 0.678 |
47DAP/reference | 1.03276 | 0.666 |
52DAP/reference | 1.25044 | 0.453 |
57DAP/reference | 1.00893 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93283 | 0.509 |
27DAP/17DAP | 1.16105 | 0.724 |
39DAP/27DAP | 1.06431 | 0.672 |
41DAP/39DAP | 1.09412 | 0.773 |
42DAP/41DAP | 0.98597 | 0.784 |
43DAP/42DAP | 0.91458 | 0.431 |
47DAP/43DAP | 1.0616 | 0.779 |
52DAP/47DAP | 1.11793 | 0.586 |
57DAP/52DAP | 1.19167 | 0.327 |
57DAP/7DAP | 1.06892 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91756 | 0.168 |
17DAP/reference | 0.8808 | 0.014 |
27DAP/reference | 0.89789 | 0.02 |
39DAP/reference | 0.88712 | 0.013 |
41DAP/reference | 0.76527 | 0.024 |
42DAP/reference | 0.76442 | 0.03 |
43DAP/reference | 0.83381 | 0.035 |
47DAP/reference | 1.00722 | 1 |
52DAP/reference | 0.8118 | 0.077 |
57DAP/reference | 0.76856 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28736 | 0.048 |
17DAP/reference | 1.6696 | 0.007 |
27DAP/reference | 1.33368 | 0.02 |
39DAP/reference | 1.36833 | 0.09 |
41DAP/reference | 1.31964 | 0.142 |
42DAP/reference | 1.04348 | 1 |
43DAP/reference | 1.45515 | 0.047 |
47DAP/reference | 1.03738 | 0.712 |
52DAP/reference | 1.4506 | 0.006 |
57DAP/reference | 1.4883 | 0.019 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84801 | 0.045 |
17DAP/reference | 0.98616 | 0.658 |
27DAP/reference | 0.88287 | 0.081 |
39DAP/reference | 0.94054 | 0.069 |
41DAP/reference | 0.93483 | 0.046 |
42DAP/reference | 0.98527 | 0.816 |
43DAP/reference | 1.1122 | 0.634 |
47DAP/reference | 0.94402 | 0.348 |
52DAP/reference | 0.91302 | 0.303 |
57DAP/reference | 0.77648 | 0.023 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06817 | 0.966 |
26DAP/20DAP | 0.98657 | 1 |
34DAP/26DAP | 1.06804 | 1 |
51DAP/34DAP | 1.01677 | 1 |
52DAP/51DAP | 1.40198 | 0.158 |
53DAP/52DAP | 0.99507 | 0.978 |
55DAP/53DAP | 1.1236 | 0.519 |
57DAP/55DAP | 0.99181 | 0.88 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 0.74705 | 0.118 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.50599 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.74249 | 0.208 |
Mature Green Tomato/Ripe Tomato | 1.02122 | 0.948 |
Immature Eggplant/Mature Eggplant | 1.47151 | 0.051 |
Ripe Pepper/Ripe Tomato | 2.69296 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.58194 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08538 | 1 |
1-1-2/M82 | 0.9177 | 1 |
12-2/M82 | 0.89744 | 0.955 |
12-4/M82 | 0.83496 | |
1-3/M82 | 0.92406 | 1 |
2-1-1/M82 | 0.68649 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.01386 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.83871 | 1 |
4-1/M82 | 1.27535 | 0.512 |
4-3-2/M82 | 0.71956 | 0.487 |
4-3/M82 | 1.16809 | 1 |
5-3/M82 | 0.8904 | 1 |
6-2/M82 | 0.78732 | 0.497 |
6-3/M82 | 0.95929 | 1 |
7-1/M82 | 0.8632 | |
7-2/M82 | 1.08243 | 0.385 |
9-3-2/M82 | 0.77028 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.92006 | 1 |
IL2-6/WTpooled | 1.59532 | 0.395 |
IL7-5/WTpooled | 1.27147 | 0.792 |
IL7-3/WTpooled | 0.75074 | 0.418 |
IL12-4/WTpooled | 0.9119 | 0.566 |
IL1-4/WTpooled | 1.17101 | 1 |
WT/WTpooled | 0.95359 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03904 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0251 | 0.921 |
DC3000/delta hrp 6h | 1.06752 | 1 |
DC3000/delta hrp 12h | 1.06784 | 1 |
DC3000/delta hrp 24h | 1.09737 | 0.336 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07344 | 0.121 |
DC3000 delta B/DC3000 delta AB | 1.11195 | 0.372 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04111 | 1 |
Exp 36h | 1.25956 | 0.489 |
Exp 60h | 1.28358 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96003 | 1 |
Var 0h | 0.50944 | 1 |
Var 12h I row2-row1 | 1.01268 | 1 |
Var 12h NI row2-row1 | 0.96455 | 0.546 |
Var 36h I row2-row1 | 1.12759 | 0.908 |
Var 36h NI row2-row1 | 0.99858 | 1 |
Var 60h I row2-row1 | 1.02804 | 1 |
Var 60h NI row2-row1 | 0.98327 | 1 |
Time course 0hI-0hNI | 0.98585 | 0.97 |
Time course 12hI-12hNI | 0.89814 | 0.597 |
Time course 36hI-36hNI | 1.05588 | 0.218 |
Time course 60hI-60hNI | 1.20648 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01741 | 0.321 |
transgenic ySAMdc/azygous control (breaker) | 1.29084 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.00295 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93451 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.0219 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.84067 | 0.172 |
Manapal/WT (break) | 1.26577 | 0.183 |
Manapal/WT (red) | 1.11494 | 0.413 |
|
|