Expression of 1-1-8.2.2.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.018040.997
27DAP/17DAP0.95950.958
39DAP/27DAP0.956220.652
41DAP/39DAP1.181270.549
42DAP/41DAP0.989471
43DAP/42DAP0.902980.867
47DAP/43DAP1.053440.873
52DAP/47DAP1.37770.549
57DAP/52DAP0.941040.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.168820.366
17DAP/reference1.11970.399
27DAP/reference1.081140.384
39DAP/reference1.046060.615
41DAP/reference1.054910.393
42DAP/reference1.188730.055
43DAP/reference1.047760.678
47DAP/reference1.032760.666
52DAP/reference1.250440.453
57DAP/reference1.008930.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.932830.509
27DAP/17DAP1.161050.724
39DAP/27DAP1.064310.672
41DAP/39DAP1.094120.773
42DAP/41DAP0.985970.784
43DAP/42DAP0.914580.431
47DAP/43DAP1.06160.779
52DAP/47DAP1.117930.586
57DAP/52DAP1.191670.327
57DAP/7DAP1.068921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.917560.168
17DAP/reference0.88080.014
27DAP/reference0.897890.02
39DAP/reference0.887120.013
41DAP/reference0.765270.024
42DAP/reference0.764420.03
43DAP/reference0.833810.035
47DAP/reference1.007221
52DAP/reference0.81180.077
57DAP/reference0.768560.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.287360.048
17DAP/reference1.66960.007
27DAP/reference1.333680.02
39DAP/reference1.368330.09
41DAP/reference1.319640.142
42DAP/reference1.043481
43DAP/reference1.455150.047
47DAP/reference1.037380.712
52DAP/reference1.45060.006
57DAP/reference1.48830.019

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.848010.045
17DAP/reference0.986160.658
27DAP/reference0.882870.081
39DAP/reference0.940540.069
41DAP/reference0.934830.046
42DAP/reference0.985270.816
43DAP/reference1.11220.634
47DAP/reference0.944020.348
52DAP/reference0.913020.303
57DAP/reference0.776480.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.068170.966
26DAP/20DAP0.986571
34DAP/26DAP1.068041
51DAP/34DAP1.016771
52DAP/51DAP1.401980.158
53DAP/52DAP0.995070.978
55DAP/53DAP1.12360.519
57DAP/55DAP0.991810.88
62DAP/57DAPN/AN/A
68DAP/62DAP0.747050.118
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.505990.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.742490.208
Mature Green Tomato/Ripe Tomato1.021220.948
Immature Eggplant/Mature Eggplant1.471510.051
Ripe Pepper/Ripe Tomato2.692960.258
Mature Eggplant/Ripe Tomato1.581940.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.085381
1-1-2/M820.91771
12-2/M820.897440.955
12-4/M820.83496
1-3/M820.924061
2-1-1/M820.68649
2-1/M82N/AN/A
2-6/M821.013861
3-2/M82N/AN/A
4-1-1/M820.838711
4-1/M821.275350.512
4-3-2/M820.719560.487
4-3/M821.168091
5-3/M820.89041
6-2/M820.787320.497
6-3/M820.959291
7-1/M820.8632
7-2/M821.082430.385
9-3-2/M820.770280.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.920061
IL2-6/WTpooled1.595320.395
IL7-5/WTpooled1.271470.792
IL7-3/WTpooled0.750740.418
IL12-4/WTpooled0.91190.566
IL1-4/WTpooled1.171011
WT/WTpooled0.953591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.039040.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.02510.921
DC3000/delta hrp 6h1.067521
DC3000/delta hrp 12h1.067841
DC3000/delta hrp 24h1.097370.336

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.073440.121
DC3000 delta B/DC3000 delta AB1.111950.372

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.041111
Exp 36h1.259560.489
Exp 60h1.283580.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.960031
Var 0h0.509441
Var 12h I row2-row11.012681
Var 12h NI row2-row10.964550.546
Var 36h I row2-row11.127590.908
Var 36h NI row2-row10.998581
Var 60h I row2-row11.028041
Var 60h NI row2-row10.983271
Time course 0hI-0hNI0.985850.97
Time course 12hI-12hNI0.898140.597
Time course 36hI-36hNI1.055880.218
Time course 60hI-60hNI1.206480.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.017410.321
transgenic ySAMdc/azygous control (breaker)1.290840.178
transgenic ySAMdc/azygous control (red)1.002951

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.934510.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.02190.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.840670.172
Manapal/WT (break)1.265770.183
Manapal/WT (red)1.114940.413