Expression of 1-1-8.2.2.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.923530.596
27DAP/17DAP0.762390.272
39DAP/27DAP1.079230.956
41DAP/39DAP0.848940.422
42DAP/41DAP1.053460.994
43DAP/42DAP1.135550.816
47DAP/43DAP0.977120.89
52DAP/47DAP1.09520.96
57DAP/52DAP1.332350.477

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.169310.735
17DAP/reference1.25230.33
27DAP/reference1.304220.405
39DAP/reference1.73690.075
41DAP/reference1.176950.48
42DAP/reference1.288270.05
43DAP/reference1.019350.904
47DAP/reference1.278810.011
52DAP/reference1.20140.878
57DAP/reference1.448420.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.460350.057
27DAP/17DAP1.114711
39DAP/27DAP0.6340.11
41DAP/39DAP0.9130.696
42DAP/41DAP0.902810.37
43DAP/42DAP0.882550.224
47DAP/43DAP0.920030.647
52DAP/47DAP1.52210.174
57DAP/52DAP1.243250.405
57DAP/7DAP0.731891

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.501010.035
17DAP/reference0.983580.447
27DAP/reference1.837130.008
39DAP/reference0.975190.474
41DAP/reference1.611480.013
42DAP/reference2.505010.014
43DAP/reference4.315060.006
47DAP/reference2.870580.051
52DAP/reference2.36850.007
57DAP/reference0.910180.183

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.379290.241
17DAP/reference1.191450.756
27DAP/reference1.464540.31
39DAP/reference1.058260.682
41DAP/reference1.109320.439
42DAP/reference1.190810.136
43DAP/reference0.779740.157
47DAP/reference1.349970.045
52DAP/reference1.251790.322
57DAP/reference1.268810.593

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.206320.212
17DAP/reference0.925520.571
27DAP/reference1.353580.075
39DAP/reference1.305050.005
41DAP/reference1.303420.019
42DAP/reference2.650710.011
43DAP/reference2.199830.013
47DAP/reference1.155310.68
52DAP/reference1.673260.065
57DAP/reference1.418230.029

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.942071
26DAP/20DAP0.878081
34DAP/26DAP0.94960.936
51DAP/34DAP1.531240.581
52DAP/51DAP1.26220.676
53DAP/52DAP0.939240.75
55DAP/53DAP1.467040.068
57DAP/55DAP0.893120.601
62DAP/57DAPN/AN/A
68DAP/62DAP0.959490.81
68DAP/14DAP0.55309

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.541280.027

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.417130.149
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.69024
Mature Eggplant/Ripe Tomato0.482540.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.083450.742
1-1-2/M821.204091
12-2/M821.014861
12-4/M820.936460.273
1-3/M821.642260.479
2-1-1/M820.910310.92
2-1/M820.84020.74
2-6/M821.298420.594
3-2/M821.01061
4-1-1/M821.094261
4-1/M820.80469
4-3-2/M821.5232
4-3/M820.963140.72
5-3/M821.129381
6-2/M821.114590.253
6-3/M820.855031
7-1/M820.929981
7-2/M821.287280.324
9-3-2/M820.92344

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.137110.277
IL2-6/WTpooled1.036750.441
IL7-5/WTpooled1.279190.792
IL7-3/WTpooled1.179881
IL12-4/WTpooled1.179370.737
IL1-4/WTpooled1.229811
WT/WTpooled0.986491

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.412971

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.038980.921
DC3000/delta hrp 6h0.907410.95
DC3000/delta hrp 12h1.975361
DC3000/delta hrp 24h1.114630.103

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.605520.024
DC3000 delta B/DC3000 delta AB0.553390.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.383661
Exp 60h1.076841

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.952321
Var 0h0.978661
Var 12h I row2-row10.736310.338
Var 12h NI row2-row10.960630.82
Var 36h I row2-row10.9160.805
Var 36h NI row2-row11.170331
Var 60h I row2-row11.228590.562
Var 60h NI row2-row11.017331
Time course 0hI-0hNI0.952840.725
Time course 12hI-12hNI0.996261
Time course 36hI-36hNI0.908350.166
Time course 60hI-60hNI0.129210.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.077560.748
transgenic ySAMdc/azygous control (breaker)0.913650.49
transgenic ySAMdc/azygous control (red)0.97811

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.940320.343

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.089651

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.073971
Manapal/WT (break)1.111721
Manapal/WT (red)0.952750.728