Expression of 1-1-8.2.2.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92353 | 0.596 |
27DAP/17DAP | 0.76239 | 0.272 |
39DAP/27DAP | 1.07923 | 0.956 |
41DAP/39DAP | 0.84894 | 0.422 |
42DAP/41DAP | 1.05346 | 0.994 |
43DAP/42DAP | 1.13555 | 0.816 |
47DAP/43DAP | 0.97712 | 0.89 |
52DAP/47DAP | 1.0952 | 0.96 |
57DAP/52DAP | 1.33235 | 0.477 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16931 | 0.735 |
17DAP/reference | 1.2523 | 0.33 |
27DAP/reference | 1.30422 | 0.405 |
39DAP/reference | 1.7369 | 0.075 |
41DAP/reference | 1.17695 | 0.48 |
42DAP/reference | 1.28827 | 0.05 |
43DAP/reference | 1.01935 | 0.904 |
47DAP/reference | 1.27881 | 0.011 |
52DAP/reference | 1.2014 | 0.878 |
57DAP/reference | 1.44842 | 0.014 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.46035 | 0.057 |
27DAP/17DAP | 1.11471 | 1 |
39DAP/27DAP | 0.634 | 0.11 |
41DAP/39DAP | 0.913 | 0.696 |
42DAP/41DAP | 0.90281 | 0.37 |
43DAP/42DAP | 0.88255 | 0.224 |
47DAP/43DAP | 0.92003 | 0.647 |
52DAP/47DAP | 1.5221 | 0.174 |
57DAP/52DAP | 1.24325 | 0.405 |
57DAP/7DAP | 0.73189 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50101 | 0.035 |
17DAP/reference | 0.98358 | 0.447 |
27DAP/reference | 1.83713 | 0.008 |
39DAP/reference | 0.97519 | 0.474 |
41DAP/reference | 1.61148 | 0.013 |
42DAP/reference | 2.50501 | 0.014 |
43DAP/reference | 4.31506 | 0.006 |
47DAP/reference | 2.87058 | 0.051 |
52DAP/reference | 2.3685 | 0.007 |
57DAP/reference | 0.91018 | 0.183 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37929 | 0.241 |
17DAP/reference | 1.19145 | 0.756 |
27DAP/reference | 1.46454 | 0.31 |
39DAP/reference | 1.05826 | 0.682 |
41DAP/reference | 1.10932 | 0.439 |
42DAP/reference | 1.19081 | 0.136 |
43DAP/reference | 0.77974 | 0.157 |
47DAP/reference | 1.34997 | 0.045 |
52DAP/reference | 1.25179 | 0.322 |
57DAP/reference | 1.26881 | 0.593 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20632 | 0.212 |
17DAP/reference | 0.92552 | 0.571 |
27DAP/reference | 1.35358 | 0.075 |
39DAP/reference | 1.30505 | 0.005 |
41DAP/reference | 1.30342 | 0.019 |
42DAP/reference | 2.65071 | 0.011 |
43DAP/reference | 2.19983 | 0.013 |
47DAP/reference | 1.15531 | 0.68 |
52DAP/reference | 1.67326 | 0.065 |
57DAP/reference | 1.41823 | 0.029 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94207 | 1 |
26DAP/20DAP | 0.87808 | 1 |
34DAP/26DAP | 0.9496 | 0.936 |
51DAP/34DAP | 1.53124 | 0.581 |
52DAP/51DAP | 1.2622 | 0.676 |
53DAP/52DAP | 0.93924 | 0.75 |
55DAP/53DAP | 1.46704 | 0.068 |
57DAP/55DAP | 0.89312 | 0.601 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 0.95949 | 0.81 |
68DAP/14DAP | 0.55309 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.54128 | 0.027 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.41713 | 0.149 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.69024 | |
Mature Eggplant/Ripe Tomato | 0.48254 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08345 | 0.742 |
1-1-2/M82 | 1.20409 | 1 |
12-2/M82 | 1.01486 | 1 |
12-4/M82 | 0.93646 | 0.273 |
1-3/M82 | 1.64226 | 0.479 |
2-1-1/M82 | 0.91031 | 0.92 |
2-1/M82 | 0.8402 | 0.74 |
2-6/M82 | 1.29842 | 0.594 |
3-2/M82 | 1.01061 | |
4-1-1/M82 | 1.09426 | 1 |
4-1/M82 | 0.80469 | |
4-3-2/M82 | 1.5232 | |
4-3/M82 | 0.96314 | 0.72 |
5-3/M82 | 1.12938 | 1 |
6-2/M82 | 1.11459 | 0.253 |
6-3/M82 | 0.85503 | 1 |
7-1/M82 | 0.92998 | 1 |
7-2/M82 | 1.28728 | 0.324 |
9-3-2/M82 | 0.92344 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.13711 | 0.277 |
IL2-6/WTpooled | 1.03675 | 0.441 |
IL7-5/WTpooled | 1.27919 | 0.792 |
IL7-3/WTpooled | 1.17988 | 1 |
IL12-4/WTpooled | 1.17937 | 0.737 |
IL1-4/WTpooled | 1.22981 | 1 |
WT/WTpooled | 0.98649 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.41297 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03898 | 0.921 |
DC3000/delta hrp 6h | 0.90741 | 0.95 |
DC3000/delta hrp 12h | 1.97536 | 1 |
DC3000/delta hrp 24h | 1.11463 | 0.103 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.60552 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.55339 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.38366 | 1 |
Exp 60h | 1.07684 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95232 | 1 |
Var 0h | 0.97866 | 1 |
Var 12h I row2-row1 | 0.73631 | 0.338 |
Var 12h NI row2-row1 | 0.96063 | 0.82 |
Var 36h I row2-row1 | 0.916 | 0.805 |
Var 36h NI row2-row1 | 1.17033 | 1 |
Var 60h I row2-row1 | 1.22859 | 0.562 |
Var 60h NI row2-row1 | 1.01733 | 1 |
Time course 0hI-0hNI | 0.95284 | 0.725 |
Time course 12hI-12hNI | 0.99626 | 1 |
Time course 36hI-36hNI | 0.90835 | 0.166 |
Time course 60hI-60hNI | 0.12921 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07756 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 0.91365 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.9781 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94032 | 0.343 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.08965 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07397 | 1 |
Manapal/WT (break) | 1.11172 | 1 |
Manapal/WT (red) | 0.95275 | 0.728 |
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