Expression of 1-1-8.2.2.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.48029 | 0.359 |
27DAP/17DAP | 1.18618 | 0.849 |
39DAP/27DAP | 1.14637 | 0.816 |
41DAP/39DAP | 1.03074 | 0.758 |
42DAP/41DAP | 1.12042 | 0.913 |
43DAP/42DAP | 1.17221 | 0.787 |
47DAP/43DAP | 1.53028 | 0.197 |
52DAP/47DAP | 0.99511 | 0.854 |
57DAP/52DAP | 0.7767 | 0.702 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88433 | 0.106 |
17DAP/reference | 1.03842 | 0.585 |
27DAP/reference | 1.01576 | 1 |
39DAP/reference | 1.08803 | 0.311 |
41DAP/reference | 1.07886 | 0.48 |
42DAP/reference | 0.91192 | 0.095 |
43DAP/reference | 1.04937 | 0.646 |
47DAP/reference | 0.83928 | 0.01 |
52DAP/reference | 0.88671 | 0.071 |
57DAP/reference | 0.88494 | 0.082 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.68604 | 0.072 |
27DAP/17DAP | 0.94124 | 0.782 |
39DAP/27DAP | 1.1722 | 0.499 |
41DAP/39DAP | 1.06864 | 0.876 |
42DAP/41DAP | 0.99816 | 0.884 |
43DAP/42DAP | 1.11207 | 0.297 |
47DAP/43DAP | 1.18964 | 0.492 |
52DAP/47DAP | 0.9824 | 0.93 |
57DAP/52DAP | 1.10845 | 0.584 |
57DAP/7DAP | 0.95916 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00931 | 1 |
17DAP/reference | 1.13253 | 0.269 |
27DAP/reference | 1.0794 | 0.974 |
39DAP/reference | 1.1347 | 0.46 |
41DAP/reference | 1.10213 | 0.389 |
42DAP/reference | 1.12658 | 0.405 |
43DAP/reference | 1.11899 | 0.603 |
47DAP/reference | 1.12474 | 0.837 |
52DAP/reference | 0.95025 | 0.332 |
57DAP/reference | 1.048 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99926 | 0.869 |
17DAP/reference | 0.97751 | 0.561 |
27DAP/reference | 0.8393 | 0.139 |
39DAP/reference | 0.93519 | 0.322 |
41DAP/reference | 0.85228 | 0.067 |
42DAP/reference | 0.78888 | 0.021 |
43DAP/reference | 1.09745 | 0.809 |
47DAP/reference | 1.13608 | 0.256 |
52DAP/reference | 0.94947 | 0.171 |
57DAP/reference | 1.09947 | 0.567 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1923 | 0.202 |
17DAP/reference | 1.10092 | 0.675 |
27DAP/reference | 0.98108 | 0.691 |
39DAP/reference | 0.96937 | 0.591 |
41DAP/reference | 0.81881 | 0.132 |
42DAP/reference | 0.79013 | 0.059 |
43DAP/reference | 1.11527 | 0.738 |
47DAP/reference | 0.91166 | 0.269 |
52DAP/reference | 0.83929 | 0.25 |
57DAP/reference | 0.77151 | 0.028 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07798 | 0.966 |
26DAP/20DAP | 3.56841 | 0.079 |
34DAP/26DAP | 1.47294 | 0.19 |
51DAP/34DAP | 0.96935 | 0.779 |
52DAP/51DAP | 0.82969 | 1 |
53DAP/52DAP | 0.81059 | 0.323 |
55DAP/53DAP | 0.79292 | 0.313 |
57DAP/55DAP | 0.73353 | 0.101 |
62DAP/57DAP | 2.47387 | |
68DAP/62DAP | 1.22166 | 0.398 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.32223 | 0.028 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 8.79188 | 0.058 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 12.7245 | 0.05 |
Ripe Pepper/Ripe Tomato | 5.69702 | 1 |
Mature Eggplant/Ripe Tomato | 2.8084 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03458 | 1 |
1-1-2/M82 | 0.93105 | 1 |
12-2/M82 | 1.73631 | 1 |
12-4/M82 | 0.57779 | 0.33 |
1-3/M82 | 2.27494 | 0.479 |
2-1-1/M82 | 0.40288 | |
2-1/M82 | 2.88117 | |
2-6/M82 | 1.25405 | 1 |
3-2/M82 | 1.15442 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.66032 | |
4-3-2/M82 | 1.50171 | 1 |
4-3/M82 | 0.94932 | 1 |
5-3/M82 | 1.93022 | 0.427 |
6-2/M82 | 1.89411 | 1 |
6-3/M82 | 1.03472 | 1 |
7-1/M82 | 1.30326 | 1 |
7-2/M82 | 3.84353 | 0.318 |
9-3-2/M82 | 1.13595 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.16827 | 0.46 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.17528 | 1 |
IL12-4/WTpooled | 0.76221 | 0.566 |
IL1-4/WTpooled | 0.88006 | |
WT/WTpooled | 0.96498 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.52944 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.39906 | |
DC3000/delta hrp 6h | 0.67727 | 0.95 |
DC3000/delta hrp 12h | 0.98057 | 1 |
DC3000/delta hrp 24h | 1.74683 | 0.158 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04863 | 1 |
DC3000 delta B/DC3000 delta AB | 2.24196 | 0.081 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.17088 | 1 |
Exp 36h | 1.30381 | 1 |
Exp 60h | 1.0728 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96243 | 1 |
Var 0h | 1.09434 | 0.325 |
Var 12h I row2-row1 | 0.64794 | 0.39 |
Var 12h NI row2-row1 | 1.76554 | 0.649 |
Var 36h I row2-row1 | 1.08057 | 1 |
Var 36h NI row2-row1 | 0.59612 | 0.478 |
Var 60h I row2-row1 | 0.60343 | 0.292 |
Var 60h NI row2-row1 | 0.67242 | 0.329 |
Time course 0hI-0hNI | 0.97247 | 0.9 |
Time course 12hI-12hNI | 1.14631 | 0.26 |
Time course 36hI-36hNI | 3.19163 | 0.004 |
Time course 60hI-60hNI | 35.7146 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93236 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.30765 | 0.137 |
transgenic ySAMdc/azygous control (red) | 1.88998 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99758 | 0.757 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.47138 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.99096 | 0.14 |
Manapal/WT (break) | 1.26985 | 1 |
Manapal/WT (red) | 2.01266 | 1 |
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