Expression of 1-1-8.2.2.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.480290.359
27DAP/17DAP1.186180.849
39DAP/27DAP1.146370.816
41DAP/39DAP1.030740.758
42DAP/41DAP1.120420.913
43DAP/42DAP1.172210.787
47DAP/43DAP1.530280.197
52DAP/47DAP0.995110.854
57DAP/52DAP0.77670.702

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.884330.106
17DAP/reference1.038420.585
27DAP/reference1.015761
39DAP/reference1.088030.311
41DAP/reference1.078860.48
42DAP/reference0.911920.095
43DAP/reference1.049370.646
47DAP/reference0.839280.01
52DAP/reference0.886710.071
57DAP/reference0.884940.082

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.686040.072
27DAP/17DAP0.941240.782
39DAP/27DAP1.17220.499
41DAP/39DAP1.068640.876
42DAP/41DAP0.998160.884
43DAP/42DAP1.112070.297
47DAP/43DAP1.189640.492
52DAP/47DAP0.98240.93
57DAP/52DAP1.108450.584
57DAP/7DAP0.959161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.009311
17DAP/reference1.132530.269
27DAP/reference1.07940.974
39DAP/reference1.13470.46
41DAP/reference1.102130.389
42DAP/reference1.126580.405
43DAP/reference1.118990.603
47DAP/reference1.124740.837
52DAP/reference0.950250.332
57DAP/reference1.0481

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.999260.869
17DAP/reference0.977510.561
27DAP/reference0.83930.139
39DAP/reference0.935190.322
41DAP/reference0.852280.067
42DAP/reference0.788880.021
43DAP/reference1.097450.809
47DAP/reference1.136080.256
52DAP/reference0.949470.171
57DAP/reference1.099470.567

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.19230.202
17DAP/reference1.100920.675
27DAP/reference0.981080.691
39DAP/reference0.969370.591
41DAP/reference0.818810.132
42DAP/reference0.790130.059
43DAP/reference1.115270.738
47DAP/reference0.911660.269
52DAP/reference0.839290.25
57DAP/reference0.771510.028

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.077980.966
26DAP/20DAP3.568410.079
34DAP/26DAP1.472940.19
51DAP/34DAP0.969350.779
52DAP/51DAP0.829691
53DAP/52DAP0.810590.323
55DAP/53DAP0.792920.313
57DAP/55DAP0.733530.101
62DAP/57DAP2.47387
68DAP/62DAP1.221660.398
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.322230.028

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper8.791880.058
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant12.72450.05
Ripe Pepper/Ripe Tomato5.697021
Mature Eggplant/Ripe Tomato2.80841

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.034581
1-1-2/M820.931051
12-2/M821.736311
12-4/M820.577790.33
1-3/M822.274940.479
2-1-1/M820.40288
2-1/M822.88117
2-6/M821.254051
3-2/M821.15442
4-1-1/M82N/AN/A
4-1/M820.66032
4-3-2/M821.501711
4-3/M820.949321
5-3/M821.930220.427
6-2/M821.894111
6-3/M821.034721
7-1/M821.303261
7-2/M823.843530.318
9-3-2/M821.13595

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.168270.46
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.175281
IL12-4/WTpooled0.762210.566
IL1-4/WTpooled0.88006
WT/WTpooled0.964981

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.529440.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.39906
DC3000/delta hrp 6h0.677270.95
DC3000/delta hrp 12h0.980571
DC3000/delta hrp 24h1.746830.158

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.048631
DC3000 delta B/DC3000 delta AB2.241960.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.170881
Exp 36h1.303811
Exp 60h1.07281

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.962431
Var 0h1.094340.325
Var 12h I row2-row10.647940.39
Var 12h NI row2-row11.765540.649
Var 36h I row2-row11.080571
Var 36h NI row2-row10.596120.478
Var 60h I row2-row10.603430.292
Var 60h NI row2-row10.672420.329
Time course 0hI-0hNI0.972470.9
Time course 12hI-12hNI1.146310.26
Time course 36hI-36hNI3.191630.004
Time course 60hI-60hNI35.71460.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.932360.567
transgenic ySAMdc/azygous control (breaker)0.307650.137
transgenic ySAMdc/azygous control (red)1.889980.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.997580.757

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.471380.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)4.990960.14
Manapal/WT (break)1.269851
Manapal/WT (red)2.012661