Expression of 1-1-8.2.20.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00046 | 0.801 |
27DAP/17DAP | 1.18595 | 0.842 |
39DAP/27DAP | 0.92218 | 0.62 |
41DAP/39DAP | 1.19436 | 0.289 |
42DAP/41DAP | 0.91686 | 1 |
43DAP/42DAP | 1.07518 | 0.999 |
47DAP/43DAP | 1.0834 | 0.68 |
52DAP/47DAP | 0.77673 | 0.476 |
57DAP/52DAP | 1.08597 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08073 | 0.218 |
17DAP/reference | 0.99473 | 0.819 |
27DAP/reference | 1.07975 | 0.831 |
39DAP/reference | 0.96727 | 0.651 |
41DAP/reference | 0.98282 | 0.814 |
42DAP/reference | 0.90729 | 0.045 |
43DAP/reference | 1.01061 | 0.812 |
47DAP/reference | 0.9642 | 0.3 |
52DAP/reference | 0.88184 | 0.147 |
57DAP/reference | 1.03951 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78779 | 0.219 |
27DAP/17DAP | 1.41823 | 0.15 |
39DAP/27DAP | 1.09766 | 0.862 |
41DAP/39DAP | 1.29199 | 0.719 |
42DAP/41DAP | 0.79353 | 0.178 |
43DAP/42DAP | 5.03994 | 0.513 |
47DAP/43DAP | 1.31894 | 0.286 |
52DAP/47DAP | 1.12996 | 0.979 |
57DAP/52DAP | 1.21989 | 0.376 |
57DAP/7DAP | 1.10464 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00359 | 1 |
17DAP/reference | 1.11121 | 0.477 |
27DAP/reference | 0.98691 | 0.571 |
39DAP/reference | 0.91479 | 0.23 |
41DAP/reference | 1.08628 | 0.46 |
42DAP/reference | 0.83169 | 0.095 |
43DAP/reference | 1.09088 | 0.226 |
47DAP/reference | 0.94705 | 0.504 |
52DAP/reference | 1.04605 | 1 |
57DAP/reference | 1.21124 | 0.214 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96546 | 0.639 |
17DAP/reference | 0.99231 | 0.673 |
27DAP/reference | 0.94685 | 0.366 |
39DAP/reference | 0.74118 | 0.053 |
41DAP/reference | 0.78936 | 0.064 |
42DAP/reference | 0.97779 | 0.534 |
43DAP/reference | 0.85694 | 0.236 |
47DAP/reference | 0.89418 | 0.137 |
52DAP/reference | 0.89332 | 0.111 |
57DAP/reference | 0.80098 | 0.073 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94307 | 0.335 |
17DAP/reference | 1.0546 | 0.706 |
27DAP/reference | 0.93771 | 0.063 |
39DAP/reference | 1.10703 | 0.125 |
41DAP/reference | 1.09163 | 0.588 |
42DAP/reference | 0.88788 | 0.287 |
43DAP/reference | 0.99643 | 0.59 |
47DAP/reference | 0.91819 | 0.325 |
52DAP/reference | 1.24235 | 0.284 |
57DAP/reference | 0.85424 | 0.195 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03435 | 1 |
26DAP/20DAP | 1.23999 | 0.855 |
34DAP/26DAP | 0.97707 | 0.97 |
51DAP/34DAP | 1.85838 | 0.118 |
52DAP/51DAP | 1.23865 | 0.142 |
53DAP/52DAP | 0.95807 | 0.882 |
55DAP/53DAP | 0.92382 | 0.725 |
57DAP/55DAP | 1.56232 | 0.779 |
62DAP/57DAP | 1.3837 | 0.445 |
68DAP/62DAP | 1.1852 | 0.792 |
68DAP/14DAP | 1.09001 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.42475 | 0.028 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 3.30443 | |
Mature Green Tomato/Ripe Tomato | 0.805 | 0.055 |
Immature Eggplant/Mature Eggplant | 0.76941 | 0.254 |
Ripe Pepper/Ripe Tomato | 0.76471 | |
Mature Eggplant/Ripe Tomato | 7.63694 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.81626 | 0.503 |
1-1-2/M82 | 1.076 | |
12-2/M82 | 0.73573 | 0.955 |
12-4/M82 | 0.95619 | 0.358 |
1-3/M82 | 0.70707 | 0.378 |
2-1-1/M82 | 1.0216 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.87814 | 1 |
3-2/M82 | 0.82451 | 0.455 |
4-1-1/M82 | 0.87814 | 1 |
4-1/M82 | 0.9511 | 0.665 |
4-3-2/M82 | 0.80753 | 0.487 |
4-3/M82 | 0.62614 | |
5-3/M82 | 1.14007 | 1 |
6-2/M82 | 0.82656 | 1 |
6-3/M82 | 0.99207 | 1 |
7-1/M82 | 0.94782 | 0.803 |
7-2/M82 | 0.86421 | 1 |
9-3-2/M82 | 0.88954 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.25499 | 0.365 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.35262 | 0.839 |
IL1-4/WTpooled | 1.07606 | 1 |
WT/WTpooled | 0.90648 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99218 | 1 |
DC3000/delta hrp 6h | 1.1435 | 1 |
DC3000/delta hrp 12h | 0.95929 | 1 |
DC3000/delta hrp 24h | 0.94881 | 0.654 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.54838 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.68404 | 1 |
Exp 36h | 1.00101 | 1 |
Exp 60h | 0.72592 | 0.251 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97701 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.81936 | 0.338 |
Var 12h NI row2-row1 | 0.84595 | 0.82 |
Var 36h I row2-row1 | 1.06585 | 1 |
Var 36h NI row2-row1 | 1.1184 | 1 |
Var 60h I row2-row1 | 0.98638 | 0.952 |
Var 60h NI row2-row1 | 0.91616 | 0.818 |
Time course 0hI-0hNI | 0.71738 | 0.09 |
Time course 12hI-12hNI | 0.99581 | 1 |
Time course 36hI-36hNI | 0.79858 | 0.171 |
Time course 60hI-60hNI | 0.81324 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07359 | 0.331 |
transgenic ySAMdc/azygous control (breaker) | 0.92013 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.14596 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02669 | 0.471 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06591 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02223 | 1 |
Manapal/WT (break) | 0.9004 | 1 |
Manapal/WT (red) | 1.04964 | 0.413 |
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