Expression of 1-1-8.2.20.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.000460.801
27DAP/17DAP1.185950.842
39DAP/27DAP0.922180.62
41DAP/39DAP1.194360.289
42DAP/41DAP0.916861
43DAP/42DAP1.075180.999
47DAP/43DAP1.08340.68
52DAP/47DAP0.776730.476
57DAP/52DAP1.085970.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.080730.218
17DAP/reference0.994730.819
27DAP/reference1.079750.831
39DAP/reference0.967270.651
41DAP/reference0.982820.814
42DAP/reference0.907290.045
43DAP/reference1.010610.812
47DAP/reference0.96420.3
52DAP/reference0.881840.147
57DAP/reference1.039511

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.787790.219
27DAP/17DAP1.418230.15
39DAP/27DAP1.097660.862
41DAP/39DAP1.291990.719
42DAP/41DAP0.793530.178
43DAP/42DAP5.039940.513
47DAP/43DAP1.318940.286
52DAP/47DAP1.129960.979
57DAP/52DAP1.219890.376
57DAP/7DAP1.10464

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.003591
17DAP/reference1.111210.477
27DAP/reference0.986910.571
39DAP/reference0.914790.23
41DAP/reference1.086280.46
42DAP/reference0.831690.095
43DAP/reference1.090880.226
47DAP/reference0.947050.504
52DAP/reference1.046051
57DAP/reference1.211240.214

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965460.639
17DAP/reference0.992310.673
27DAP/reference0.946850.366
39DAP/reference0.741180.053
41DAP/reference0.789360.064
42DAP/reference0.977790.534
43DAP/reference0.856940.236
47DAP/reference0.894180.137
52DAP/reference0.893320.111
57DAP/reference0.800980.073

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.943070.335
17DAP/reference1.05460.706
27DAP/reference0.937710.063
39DAP/reference1.107030.125
41DAP/reference1.091630.588
42DAP/reference0.887880.287
43DAP/reference0.996430.59
47DAP/reference0.918190.325
52DAP/reference1.242350.284
57DAP/reference0.854240.195

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.034351
26DAP/20DAP1.239990.855
34DAP/26DAP0.977070.97
51DAP/34DAP1.858380.118
52DAP/51DAP1.238650.142
53DAP/52DAP0.958070.882
55DAP/53DAP0.923820.725
57DAP/55DAP1.562320.779
62DAP/57DAP1.38370.445
68DAP/62DAP1.18520.792
68DAP/14DAP1.090011

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.424750.028

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.30443
Mature Green Tomato/Ripe Tomato0.8050.055
Immature Eggplant/Mature Eggplant0.769410.254
Ripe Pepper/Ripe Tomato0.76471
Mature Eggplant/Ripe Tomato7.636940.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.816260.503
1-1-2/M821.076
12-2/M820.735730.955
12-4/M820.956190.358
1-3/M820.707070.378
2-1-1/M821.02161
2-1/M82N/AN/A
2-6/M820.878141
3-2/M820.824510.455
4-1-1/M820.878141
4-1/M820.95110.665
4-3-2/M820.807530.487
4-3/M820.62614
5-3/M821.140071
6-2/M820.826561
6-3/M820.992071
7-1/M820.947820.803
7-2/M820.864211
9-3-2/M820.889540.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.254990.365
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.352620.839
IL1-4/WTpooled1.076061
WT/WTpooled0.906481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.992181
DC3000/delta hrp 6h1.14351
DC3000/delta hrp 12h0.959291
DC3000/delta hrp 24h0.948810.654

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.54838
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.684041
Exp 36h1.001011
Exp 60h0.725920.251

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977011
Var 0hN/AN/A
Var 12h I row2-row10.819360.338
Var 12h NI row2-row10.845950.82
Var 36h I row2-row11.065851
Var 36h NI row2-row11.11841
Var 60h I row2-row10.986380.952
Var 60h NI row2-row10.916160.818
Time course 0hI-0hNI0.717380.09
Time course 12hI-12hNI0.995811
Time course 36hI-36hNI0.798580.171
Time course 60hI-60hNI0.813240.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.073590.331
transgenic ySAMdc/azygous control (breaker)0.920130.49
transgenic ySAMdc/azygous control (red)1.145960.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.026690.471

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.065911

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.022231
Manapal/WT (break)0.90041
Manapal/WT (red)1.049640.413