Expression of 1-1-8.2.3.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07561 | 0.904 |
27DAP/17DAP | 1.07054 | 0.892 |
39DAP/27DAP | 0.73659 | 0.376 |
41DAP/39DAP | 1.20759 | 0.765 |
42DAP/41DAP | 0.88332 | 1 |
43DAP/42DAP | 0.93765 | 0.867 |
47DAP/43DAP | 0.98138 | 0.868 |
52DAP/47DAP | 1.62408 | 0.268 |
57DAP/52DAP | 0.94414 | 0.926 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90472 | 0.205 |
17DAP/reference | 0.7498 | 0.007 |
27DAP/reference | 0.96279 | 0.497 |
39DAP/reference | 0.82474 | 0.015 |
41DAP/reference | 0.78391 | 0.009 |
42DAP/reference | 0.88055 | 0.011 |
43DAP/reference | 0.87621 | 0.067 |
47DAP/reference | 1.0051 | 0.72 |
52DAP/reference | 1.12609 | 0.524 |
57DAP/reference | 1.38294 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85129 | 0.08 |
27DAP/17DAP | 1.02277 | 1 |
39DAP/27DAP | 1.05387 | 0.643 |
41DAP/39DAP | 1.07748 | 0.921 |
42DAP/41DAP | 0.90381 | 0.379 |
43DAP/42DAP | 1.03523 | 0.664 |
47DAP/43DAP | 0.99549 | 0.977 |
52DAP/47DAP | 1.01968 | 0.945 |
57DAP/52DAP | 0.93179 | 0.501 |
57DAP/7DAP | 1.14049 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92415 | 0.203 |
17DAP/reference | 1.21431 | 0.102 |
27DAP/reference | 1.12247 | 0.073 |
39DAP/reference | 1.29407 | 0.149 |
41DAP/reference | 1.31523 | 0.014 |
42DAP/reference | 1.204 | 0.059 |
43DAP/reference | 1.42832 | 0.024 |
47DAP/reference | 1.01773 | 1 |
52DAP/reference | 1.38665 | 0.062 |
57DAP/reference | 1.23657 | 0.013 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85539 | 0.134 |
17DAP/reference | 0.84947 | 0.039 |
27DAP/reference | 0.92783 | 0.317 |
39DAP/reference | 0.99241 | 0.586 |
41DAP/reference | 1.01929 | 1 |
42DAP/reference | 1.06113 | 0.555 |
43DAP/reference | 1.05128 | 0.986 |
47DAP/reference | 0.93003 | 0.27 |
52DAP/reference | 1.08622 | 0.498 |
57DAP/reference | 0.85674 | 0.032 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0914 | 0.422 |
17DAP/reference | 1.21379 | 0.258 |
27DAP/reference | 1.34477 | 0.045 |
39DAP/reference | 1.23458 | 0.05 |
41DAP/reference | 1.26153 | 0.02 |
42DAP/reference | 1.0897 | 0.333 |
43DAP/reference | 1.0751 | 0.58 |
47DAP/reference | 0.89658 | 0.183 |
52DAP/reference | 0.95831 | 0.596 |
57DAP/reference | 1.28229 | 0.028 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95168 | 1 |
26DAP/20DAP | 0.89765 | 0.512 |
34DAP/26DAP | 1.14418 | 0.819 |
51DAP/34DAP | 1.06371 | 0.73 |
52DAP/51DAP | 1.07563 | 0.626 |
53DAP/52DAP | 0.93636 | 0.587 |
55DAP/53DAP | 1.20546 | 0.067 |
57DAP/55DAP | 0.97026 | 0.817 |
62DAP/57DAP | 0.37045 | |
68DAP/62DAP | 1.49563 | 0.012 |
68DAP/14DAP | 1.79093 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.8348 | 0.129 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.10205 | 0.523 |
Immature Eggplant/Mature Eggplant | 0.72729 | 0.117 |
Ripe Pepper/Ripe Tomato | 0.35378 | 1 |
Mature Eggplant/Ripe Tomato | 2.45973 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08085 | 1 |
1-1-2/M82 | 1.34589 | |
12-2/M82 | 1.40682 | |
12-4/M82 | 1.36917 | 1 |
1-3/M82 | 0.91595 | 1 |
2-1-1/M82 | 0.89824 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.97554 | 1 |
3-2/M82 | 0.7719 | |
4-1-1/M82 | 0.91959 | 1 |
4-1/M82 | 1.59693 | 0.853 |
4-3-2/M82 | 0.79293 | |
4-3/M82 | 1.44502 | 1 |
5-3/M82 | 0.95296 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.94036 | |
7-2/M82 | 0.89733 | |
9-3-2/M82 | 0.88259 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.20382 | 0.277 |
IL2-6/WTpooled | 0.96422 | 1 |
IL7-5/WTpooled | 1.17313 | 0.792 |
IL7-3/WTpooled | 1.2114 | 1 |
IL12-4/WTpooled | 1.00785 | 1 |
IL1-4/WTpooled | 1.03102 | 1 |
WT/WTpooled | 0.97796 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91212 | 0.216 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99958 | 1 |
DC3000/delta hrp 6h | 0.98123 | 0.95 |
DC3000/delta hrp 12h | 1.03053 | 1 |
DC3000/delta hrp 24h | 0.90191 | 0.387 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.80935 | |
DC3000 delta B/DC3000 delta AB | 1.53374 | 0.081 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.82346 | 0.328 |
Exp 36h | 0.66417 | 0.406 |
Exp 60h | 0.64495 | 0.278 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9824 | 1 |
Var 0h | 0.678 | 1 |
Var 12h I row2-row1 | 1.15384 | |
Var 12h NI row2-row1 | 0.95027 | 0.394 |
Var 36h I row2-row1 | 0.8451 | 0.438 |
Var 36h NI row2-row1 | 1.03938 | |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.30696 | 0.904 |
Time course 0hI-0hNI | 1.03315 | 0.867 |
Time course 12hI-12hNI | 0.96975 | 0.719 |
Time course 36hI-36hNI | 0.81153 | 0.051 |
Time course 60hI-60hNI | 0.57289 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.81394 | 0.301 |
transgenic ySAMdc/azygous control (breaker) | 1.53333 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.06017 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93537 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.6853 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.211 | 0.105 |
Manapal/WT (break) | 1.32898 | 0.183 |
Manapal/WT (red) | 1.24881 | 0.413 |
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