Expression of 1-1-8.2.3.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.075610.904
27DAP/17DAP1.070540.892
39DAP/27DAP0.736590.376
41DAP/39DAP1.207590.765
42DAP/41DAP0.883321
43DAP/42DAP0.937650.867
47DAP/43DAP0.981380.868
52DAP/47DAP1.624080.268
57DAP/52DAP0.944140.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.904720.205
17DAP/reference0.74980.007
27DAP/reference0.962790.497
39DAP/reference0.824740.015
41DAP/reference0.783910.009
42DAP/reference0.880550.011
43DAP/reference0.876210.067
47DAP/reference1.00510.72
52DAP/reference1.126090.524
57DAP/reference1.382940.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.851290.08
27DAP/17DAP1.022771
39DAP/27DAP1.053870.643
41DAP/39DAP1.077480.921
42DAP/41DAP0.903810.379
43DAP/42DAP1.035230.664
47DAP/43DAP0.995490.977
52DAP/47DAP1.019680.945
57DAP/52DAP0.931790.501
57DAP/7DAP1.140491

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.924150.203
17DAP/reference1.214310.102
27DAP/reference1.122470.073
39DAP/reference1.294070.149
41DAP/reference1.315230.014
42DAP/reference1.2040.059
43DAP/reference1.428320.024
47DAP/reference1.017731
52DAP/reference1.386650.062
57DAP/reference1.236570.013

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.855390.134
17DAP/reference0.849470.039
27DAP/reference0.927830.317
39DAP/reference0.992410.586
41DAP/reference1.019291
42DAP/reference1.061130.555
43DAP/reference1.051280.986
47DAP/reference0.930030.27
52DAP/reference1.086220.498
57DAP/reference0.856740.032

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.09140.422
17DAP/reference1.213790.258
27DAP/reference1.344770.045
39DAP/reference1.234580.05
41DAP/reference1.261530.02
42DAP/reference1.08970.333
43DAP/reference1.07510.58
47DAP/reference0.896580.183
52DAP/reference0.958310.596
57DAP/reference1.282290.028

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.951681
26DAP/20DAP0.897650.512
34DAP/26DAP1.144180.819
51DAP/34DAP1.063710.73
52DAP/51DAP1.075630.626
53DAP/52DAP0.936360.587
55DAP/53DAP1.205460.067
57DAP/55DAP0.970260.817
62DAP/57DAP0.37045
68DAP/62DAP1.495630.012
68DAP/14DAP1.79093

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.83480.129

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.102050.523
Immature Eggplant/Mature Eggplant0.727290.117
Ripe Pepper/Ripe Tomato0.353781
Mature Eggplant/Ripe Tomato2.459730.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.080851
1-1-2/M821.34589
12-2/M821.40682
12-4/M821.369171
1-3/M820.915951
2-1-1/M820.898241
2-1/M82N/AN/A
2-6/M820.975541
3-2/M820.7719
4-1-1/M820.919591
4-1/M821.596930.853
4-3-2/M820.79293
4-3/M821.445021
5-3/M820.952961
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.94036
7-2/M820.89733
9-3-2/M820.882590.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.203820.277
IL2-6/WTpooled0.964221
IL7-5/WTpooled1.173130.792
IL7-3/WTpooled1.21141
IL12-4/WTpooled1.007851
IL1-4/WTpooled1.031021
WT/WTpooled0.977961

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.912120.216

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.999581
DC3000/delta hrp 6h0.981230.95
DC3000/delta hrp 12h1.030531
DC3000/delta hrp 24h0.901910.387

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.80935
DC3000 delta B/DC3000 delta AB1.533740.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.823460.328
Exp 36h0.664170.406
Exp 60h0.644950.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98241
Var 0h0.6781
Var 12h I row2-row11.15384
Var 12h NI row2-row10.950270.394
Var 36h I row2-row10.84510.438
Var 36h NI row2-row11.03938
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.306960.904
Time course 0hI-0hNI1.033150.867
Time course 12hI-12hNI0.969750.719
Time course 36hI-36hNI0.811530.051
Time course 60hI-60hNI0.572890.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.813940.301
transgenic ySAMdc/azygous control (breaker)1.533330.178
transgenic ySAMdc/azygous control (red)1.060171

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.935370.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.68530.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.2110.105
Manapal/WT (break)1.328980.183
Manapal/WT (red)1.248810.413