Expression of 1-1-8.2.3.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.499710.315
27DAP/17DAP1.120410.847
39DAP/27DAP1.177720.903
41DAP/39DAP1.137180.949
42DAP/41DAP1.11820.933
43DAP/42DAP1.269410.835
47DAP/43DAP0.953030.724
52DAP/47DAP0.975340.702
57DAP/52DAP1.381010.737

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.024970.616
17DAP/reference0.991210.858
27DAP/reference0.756610.092
39DAP/reference0.813590.136
41DAP/reference0.72430.154
42DAP/reference0.830210.026
43DAP/reference1.1358
47DAP/reference0.82890.03
52DAP/reference1.218780.062
57DAP/reference0.624350.358

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.139450.34
27DAP/17DAP0.928640.724
39DAP/27DAP1.344990.043
41DAP/39DAP0.728860.121
42DAP/41DAP1.004590.91
43DAP/42DAP1.15540.324
47DAP/43DAP1.075850.713
52DAP/47DAP1.186110.589
57DAP/52DAP1.37260.104
57DAP/7DAP1.404820.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.455790.024
17DAP/reference2.04810.006
27DAP/reference1.673370.008
39DAP/reference3.095640.005
41DAP/reference1.894090.013
42DAP/reference2.95320.016
43DAP/reference3.805540.006
47DAP/reference2.519020.067
52DAP/reference3.276770.007
57DAP/reference2.823020.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.913570.412
17DAP/reference0.844510.106
27DAP/reference0.849240.181
39DAP/reference0.980460.539
41DAP/reference1.133250.536
42DAP/reference1.072550.664
43DAP/reference0.960680.468
47DAP/reference1.1010.343
52DAP/reference0.822170.031
57DAP/reference0.794570.03

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.82620.035
17DAP/reference1.120950.689
27DAP/reference1.631310.021
39DAP/reference2.013530.01
41DAP/reference1.37020.069
42DAP/reference1.825340.019
43DAP/reference1.655860.037
47DAP/reference0.947940.357
52DAP/reference2.098090.068
57DAP/reference1.824090.044

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.227480.85
26DAP/20DAP2.443790.099
34DAP/26DAP0.879990.763
51DAP/34DAP1.117730.314
52DAP/51DAP1.451930.035
53DAP/52DAP1.109530.565
55DAP/53DAP0.871170.336
57DAP/55DAP1.10820.955
62DAP/57DAP30.3077
68DAP/62DAP1.085321
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.657860.039

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.50381
Mature Green Tomato/Ripe Tomato2.038610.064
Immature Eggplant/Mature Eggplant1.55078
Ripe Pepper/Ripe Tomato1.112711
Mature Eggplant/Ripe Tomato1.756970.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.144660.742
1-1-2/M820.857241
12-2/M820.640490.955
12-4/M820.916031
1-3/M821.258660.248
2-1-1/M821.222441
2-1/M82N/AN/A
2-6/M821.079140.385
3-2/M821.23024
4-1-1/M82N/AN/A
4-1/M821.23967
4-3-2/M821.28155
4-3/M820.991631
5-3/M820.923411
6-2/M821.208450.198
6-3/M821.021091
7-1/M820.971711
7-2/M821.159
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.30590.277
IL2-6/WTpooled1.101270.659
IL7-5/WTpooled0.788371
IL7-3/WTpooled1.202811
IL12-4/WTpooled0.788270.554
IL1-4/WTpooled1.021721
WT/WTpooled0.839191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.180240.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.977851
DC3000/delta hrp 6h0.848260.95
DC3000/delta hrp 12h0.960441
DC3000/delta hrp 24h1.066010.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.362270.042
DC3000 delta B/DC3000 delta AB1.299360.126

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.203251
Exp 36h1.382251
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.01909
Var 0h1.154020.782
Var 12h I row2-row10.77770.418
Var 12h NI row2-row10.86880.546
Var 36h I row2-row10.784710.34
Var 36h NI row2-row11.2291
Var 60h I row2-row10.24584
Var 60h NI row2-row11.123880.904
Time course 0hI-0hNI0.896780.162
Time course 12hI-12hNI0.914680.546
Time course 36hI-36hNI0.809060.031
Time course 60hI-60hNI0.165310.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.167290.339
transgenic ySAMdc/azygous control (breaker)1.161471
transgenic ySAMdc/azygous control (red)0.871151

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.030410.301

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.075730.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.911750.088
Manapal/WT (break)0.891591
Manapal/WT (red)1.331760.413