Expression of 1-1-8.2.3.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.49971 | 0.315 |
27DAP/17DAP | 1.12041 | 0.847 |
39DAP/27DAP | 1.17772 | 0.903 |
41DAP/39DAP | 1.13718 | 0.949 |
42DAP/41DAP | 1.1182 | 0.933 |
43DAP/42DAP | 1.26941 | 0.835 |
47DAP/43DAP | 0.95303 | 0.724 |
52DAP/47DAP | 0.97534 | 0.702 |
57DAP/52DAP | 1.38101 | 0.737 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02497 | 0.616 |
17DAP/reference | 0.99121 | 0.858 |
27DAP/reference | 0.75661 | 0.092 |
39DAP/reference | 0.81359 | 0.136 |
41DAP/reference | 0.7243 | 0.154 |
42DAP/reference | 0.83021 | 0.026 |
43DAP/reference | 1.1358 | |
47DAP/reference | 0.8289 | 0.03 |
52DAP/reference | 1.21878 | 0.062 |
57DAP/reference | 0.62435 | 0.358 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13945 | 0.34 |
27DAP/17DAP | 0.92864 | 0.724 |
39DAP/27DAP | 1.34499 | 0.043 |
41DAP/39DAP | 0.72886 | 0.121 |
42DAP/41DAP | 1.00459 | 0.91 |
43DAP/42DAP | 1.1554 | 0.324 |
47DAP/43DAP | 1.07585 | 0.713 |
52DAP/47DAP | 1.18611 | 0.589 |
57DAP/52DAP | 1.3726 | 0.104 |
57DAP/7DAP | 1.40482 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.45579 | 0.024 |
17DAP/reference | 2.0481 | 0.006 |
27DAP/reference | 1.67337 | 0.008 |
39DAP/reference | 3.09564 | 0.005 |
41DAP/reference | 1.89409 | 0.013 |
42DAP/reference | 2.9532 | 0.016 |
43DAP/reference | 3.80554 | 0.006 |
47DAP/reference | 2.51902 | 0.067 |
52DAP/reference | 3.27677 | 0.007 |
57DAP/reference | 2.82302 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91357 | 0.412 |
17DAP/reference | 0.84451 | 0.106 |
27DAP/reference | 0.84924 | 0.181 |
39DAP/reference | 0.98046 | 0.539 |
41DAP/reference | 1.13325 | 0.536 |
42DAP/reference | 1.07255 | 0.664 |
43DAP/reference | 0.96068 | 0.468 |
47DAP/reference | 1.101 | 0.343 |
52DAP/reference | 0.82217 | 0.031 |
57DAP/reference | 0.79457 | 0.03 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.8262 | 0.035 |
17DAP/reference | 1.12095 | 0.689 |
27DAP/reference | 1.63131 | 0.021 |
39DAP/reference | 2.01353 | 0.01 |
41DAP/reference | 1.3702 | 0.069 |
42DAP/reference | 1.82534 | 0.019 |
43DAP/reference | 1.65586 | 0.037 |
47DAP/reference | 0.94794 | 0.357 |
52DAP/reference | 2.09809 | 0.068 |
57DAP/reference | 1.82409 | 0.044 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.22748 | 0.85 |
26DAP/20DAP | 2.44379 | 0.099 |
34DAP/26DAP | 0.87999 | 0.763 |
51DAP/34DAP | 1.11773 | 0.314 |
52DAP/51DAP | 1.45193 | 0.035 |
53DAP/52DAP | 1.10953 | 0.565 |
55DAP/53DAP | 0.87117 | 0.336 |
57DAP/55DAP | 1.1082 | 0.955 |
62DAP/57DAP | 30.3077 | |
68DAP/62DAP | 1.08532 | 1 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.65786 | 0.039 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.50381 | |
Mature Green Tomato/Ripe Tomato | 2.03861 | 0.064 |
Immature Eggplant/Mature Eggplant | 1.55078 | |
Ripe Pepper/Ripe Tomato | 1.11271 | 1 |
Mature Eggplant/Ripe Tomato | 1.75697 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.14466 | 0.742 |
1-1-2/M82 | 0.85724 | 1 |
12-2/M82 | 0.64049 | 0.955 |
12-4/M82 | 0.91603 | 1 |
1-3/M82 | 1.25866 | 0.248 |
2-1-1/M82 | 1.22244 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.07914 | 0.385 |
3-2/M82 | 1.23024 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.23967 | |
4-3-2/M82 | 1.28155 | |
4-3/M82 | 0.99163 | 1 |
5-3/M82 | 0.92341 | 1 |
6-2/M82 | 1.20845 | 0.198 |
6-3/M82 | 1.02109 | 1 |
7-1/M82 | 0.97171 | 1 |
7-2/M82 | 1.159 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.3059 | 0.277 |
IL2-6/WTpooled | 1.10127 | 0.659 |
IL7-5/WTpooled | 0.78837 | 1 |
IL7-3/WTpooled | 1.20281 | 1 |
IL12-4/WTpooled | 0.78827 | 0.554 |
IL1-4/WTpooled | 1.02172 | 1 |
WT/WTpooled | 0.83919 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.18024 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97785 | 1 |
DC3000/delta hrp 6h | 0.84826 | 0.95 |
DC3000/delta hrp 12h | 0.96044 | 1 |
DC3000/delta hrp 24h | 1.06601 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.36227 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.29936 | 0.126 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.20325 | 1 |
Exp 36h | 1.38225 | 1 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01909 | |
Var 0h | 1.15402 | 0.782 |
Var 12h I row2-row1 | 0.7777 | 0.418 |
Var 12h NI row2-row1 | 0.8688 | 0.546 |
Var 36h I row2-row1 | 0.78471 | 0.34 |
Var 36h NI row2-row1 | 1.229 | 1 |
Var 60h I row2-row1 | 0.24584 | |
Var 60h NI row2-row1 | 1.12388 | 0.904 |
Time course 0hI-0hNI | 0.89678 | 0.162 |
Time course 12hI-12hNI | 0.91468 | 0.546 |
Time course 36hI-36hNI | 0.80906 | 0.031 |
Time course 60hI-60hNI | 0.16531 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.16729 | 0.339 |
transgenic ySAMdc/azygous control (breaker) | 1.16147 | 1 |
transgenic ySAMdc/azygous control (red) | 0.87115 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03041 | 0.301 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.07573 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.91175 | 0.088 |
Manapal/WT (break) | 0.89159 | 1 |
Manapal/WT (red) | 1.33176 | 0.413 |
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