Expression of 1-1-8.2.3.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.144120.851
27DAP/17DAP1.074120.91
39DAP/27DAP0.99940.82
41DAP/39DAP1.001690.949
42DAP/41DAP1.125650.772
43DAP/42DAP1.292310.593
47DAP/43DAP0.871890.584
52DAP/47DAP1.063710.997
57DAP/52DAP1.143270.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.160750.041
17DAP/reference0.998420.819
27DAP/reference1.079420.548
39DAP/reference1.072320.017
41DAP/reference1.058471
42DAP/reference1.083810.299
43DAP/reference1.53302
47DAP/reference1.202720.005
52DAP/reference1.148780.272
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.938070.496
27DAP/17DAP0.971640.887
39DAP/27DAP1.142950.672
41DAP/39DAP1.145870.355
42DAP/41DAP1.042630.899
43DAP/42DAP1.282830.086
47DAP/43DAP0.906620.457
52DAP/47DAP0.834610.334
57DAP/52DAP0.909050.331
57DAP/7DAP1.361380.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.012351
17DAP/reference1.25410.045
27DAP/reference1.160490.107
39DAP/reference1.335460.015
41DAP/reference1.217070.056
42DAP/reference1.365360.018
43DAP/reference1.347350.011
47DAP/reference1.002431
52DAP/reference1.146080.033
57DAP/reference1.189490.066

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.249650.038
17DAP/reference1.260090.243
27DAP/reference1.303930.093
39DAP/reference1.082131
41DAP/reference1.332230.094
42DAP/reference1.133820.433
43DAP/reference1.242220.411
47DAP/reference1.05290.343
52DAP/reference1.377090.098
57DAP/reference1.128560.786

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.228180.031
17DAP/reference1.044010.854
27DAP/reference1.439830.1
39DAP/reference1.288560.019
41DAP/reference1.253960.013
42DAP/reference1.314730.028
43DAP/reference1.231170.071
47DAP/reference1.090610.228
52DAP/reference1.170380.443
57DAP/reference1.15050.192

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.070211
26DAP/20DAP1.376660.22
34DAP/26DAP0.899640.944
51DAP/34DAP1.250171
52DAP/51DAP1.019980.915
53DAP/52DAP1.222720.845
55DAP/53DAP1.339880.29
57DAP/55DAP0.972610.859
62DAP/57DAPN/AN/A
68DAP/62DAP0.87263
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.49170.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.866170.351
Mature Green Tomato/Ripe Tomato0.422610.018
Immature Eggplant/Mature Eggplant1.357910.051
Ripe Pepper/Ripe Tomato1.414881
Mature Eggplant/Ripe Tomato1.696980.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.007231
12-2/M82N/AN/A
12-4/M820.973751
1-3/M820.941491
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.25689
3-2/M820.97267
4-1-1/M82N/AN/A
4-1/M821.302180.853
4-3-2/M821.072021
4-3/M820.90265
5-3/M820.963241
6-2/M820.9362
6-3/M820.86792
7-1/M821.06834
7-2/M82N/AN/A
9-3-2/M821.11074

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.179320.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.933661
DC3000/delta hrp 6h1.043010.95
DC3000/delta hrp 12h0.994071
DC3000/delta hrp 24h0.970260.851

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.18353
DC3000 delta B/DC3000 delta AB1.16570.311

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.946371
Exp 36h1.124880.409
Exp 60h1.144370.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98467
Var 0h1.046190.936
Var 12h I row2-row10.807870.344
Var 12h NI row2-row11.145481
Var 36h I row2-row10.95761
Var 36h NI row2-row11.108251
Var 60h I row2-row11.56056
Var 60h NI row2-row11.150950.904
Time course 0hI-0hNI0.958330.787
Time course 12hI-12hNI0.931810.581
Time course 36hI-36hNI0.901150.187
Time course 60hI-60hNI0.696220.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.929590.348
transgenic ySAMdc/azygous control (breaker)1.270980.248
transgenic ySAMdc/azygous control (red)0.97491

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.998030.911

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.887651
Manapal/WT (break)1.089191
Manapal/WT (red)1.130760.413