Expression of 1-1-8.2.3.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.970680.77
27DAP/17DAP1.072130.881
39DAP/27DAP1.233020.566
41DAP/39DAP1.083960.63
42DAP/41DAP2.097770.033
43DAP/42DAP1.62410.527
47DAP/43DAP1.281020.438
52DAP/47DAP0.594520.08
57DAP/52DAP1.226570.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.078540.587
17DAP/reference1.093850.585
27DAP/reference1.329020.028
39DAP/reference1.29260.144
41DAP/reference1.016950.667
42DAP/reference1.049891
43DAP/reference1.569950.73
47DAP/reference1.123320.318
52DAP/reference1.640440.009
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.986150.763
27DAP/17DAP0.936350.854
39DAP/27DAP1.089120.587
41DAP/39DAP0.853240.42
42DAP/41DAP1.217480.282
43DAP/42DAP1.225920.176
47DAP/43DAP1.423410.017
52DAP/47DAP1.201220.666
57DAP/52DAP0.817910.348
57DAP/7DAP0.786521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.210580.16
17DAP/reference1.06330.754
27DAP/reference1.118850.664
39DAP/reference1.248420.371
41DAP/reference1.064090.35
42DAP/reference1.142480.405
43DAP/reference1.072440.569
47DAP/reference1.166410.685
52DAP/reference1.019470.74
57DAP/reference1.052290.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.077230.926
17DAP/reference1.100270.658
27DAP/reference1.212390.221
39DAP/reference1.505010.032
41DAP/reference1.325830.011
42DAP/reference1.278340.038
43DAP/reference0.962620.507
47DAP/reference1.139530.079
52DAP/reference1.37880.032
57DAP/reference0.976730.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.00350.804
17DAP/reference1.16470.306
27DAP/reference0.917510.23
39DAP/reference1.037851
41DAP/reference1.134360.521
42DAP/reference1.21570.424
43DAP/reference1.32110.223
47DAP/reference1.984260.006
52DAP/reference1.11960.623
57DAP/reference1.542880.014

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.065421
26DAP/20DAP1.091440.855
34DAP/26DAP0.947360.945
51DAP/34DAP1.0959
52DAP/51DAP1.20710.51
53DAP/52DAP1.023050.998
55DAP/53DAP1.139620.737
57DAP/55DAP0.829370.277
62DAP/57DAPN/AN/A
68DAP/62DAP1.11611
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.757060.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.203790.276
Mature Green Tomato/Ripe Tomato0.358080.017
Immature Eggplant/Mature Eggplant2.01667
Ripe Pepper/Ripe Tomato1.669241
Mature Eggplant/Ripe Tomato1.106781

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.47251
12-2/M82N/AN/A
12-4/M821.377341
1-3/M821.517060.277
2-1-1/M820.871540.92
2-1/M820.672760.519
2-6/M821.23337
3-2/M821.325360.549
4-1-1/M82N/AN/A
4-1/M822.203861
4-3-2/M821.343291
4-3/M821.191621
5-3/M820.883461
6-2/M821.54641
6-3/M821.013581
7-1/M820.788890.509
7-2/M821.24023
9-3-2/M821.676511

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.941251
IL2-6/WTpooled0.695590.473
IL7-5/WTpooled0.820661
IL7-3/WTpooled1.43091
IL12-4/WTpooled1.02774
IL1-4/WTpooled0.955681
WT/WTpooled1.391960.686

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.22090.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.899991
DC3000/delta hrp 6h1.113221
DC3000/delta hrp 12h1.021741
DC3000/delta hrp 24h0.848290.22

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.138380.449

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.391851
Exp 36h0.385730.165
Exp 60h0.998351

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.05650.98
Var 12h I row2-row10.737680.565
Var 12h NI row2-row10.957640.906
Var 36h I row2-row11.073211
Var 36h NI row2-row11.083581
Var 60h I row2-row11.71313
Var 60h NI row2-row11.015561
Time course 0hI-0hNI0.93032
Time course 12hI-12hNI0.80134
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.821170.299
transgenic ySAMdc/azygous control (breaker)1.631010.248
transgenic ySAMdc/azygous control (red)1.095360.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.306370.033

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.978760.087
Manapal/WT (break)2.386010.13
Manapal/WT (red)1.878730.222