Expression of 1-1-8.2.3.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.357920.188
27DAP/17DAP1.140050.842
39DAP/27DAP1.066530.888
41DAP/39DAP1.274050.203
42DAP/41DAP1.590790.143
43DAP/42DAP1.044651
47DAP/43DAP2.501220.198
52DAP/47DAP0.662730.174
57DAP/52DAP1.8620.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.462280.014
17DAP/reference0.916440.129
27DAP/reference0.850190.08
39DAP/reference1.039550.534
41DAP/reference0.942920.542
42DAP/reference0.996250.645
43DAP/reference0.834460.464
47DAP/reference0.924670.445
52DAP/reference1.069070.878
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.881330.251
27DAP/17DAP0.962350.821
39DAP/27DAP1.227840.558
41DAP/39DAP1.013831
42DAP/41DAP1.109740.904
43DAP/42DAP1.058430.788
47DAP/43DAP1.165050.276
52DAP/47DAP1.059490.851
57DAP/52DAP1.527410.057
57DAP/7DAP1.393831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.922710.361
17DAP/reference0.967190.338
27DAP/reference1.119160.453
39DAP/reference0.963520.411
41DAP/reference1.029570.949
42DAP/reference1.010241
43DAP/reference0.969970.403
47DAP/reference1.26370.195
52DAP/reference1.047630.732
57DAP/reference1.006380.719

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.227720.119
17DAP/reference1.211110.186
27DAP/reference1.713380.016
39DAP/reference1.3150.09
41DAP/reference1.247450.084
42DAP/reference1.556420.008
43DAP/reference1.354870.164
47DAP/reference1.19230.095
52DAP/reference1.102670.057
57DAP/reference0.925590.18

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.987080.566
17DAP/reference1.031980.966
27DAP/reference0.982180.624
39DAP/reference0.913580.163
41DAP/reference1.064140.916
42DAP/reference1.097990.347
43DAP/reference0.938310.432
47DAP/reference1.008370.708
52DAP/reference0.886160.303
57DAP/reference1.040180.786

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.970851
26DAP/20DAP1.139390.813
34DAP/26DAP0.93790.945
51DAP/34DAP1.121780.775
52DAP/51DAP0.737061
53DAP/52DAP1.367490.623
55DAP/53DAP1.020251
57DAP/55DAP1.339120.694
62DAP/57DAP0.98879
68DAP/62DAP1.858970.285
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.992430.064

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.295090.058
Mature Green Tomato/Ripe Tomato0.306650.017
Immature Eggplant/Mature Eggplant0.906390.329
Ripe Pepper/Ripe Tomato0.71340.224
Mature Eggplant/Ripe Tomato0.837891

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.090910.877
1-1-2/M821.21581
12-2/M820.885090.955
12-4/M821.332181
1-3/M821.855910.248
2-1-1/M821.102830.689
2-1/M820.65650.325
2-6/M820.828221
3-2/M821.674270.463
4-1-1/M821.527461
4-1/M821.933420.853
4-3-2/M821.358360.241
4-3/M821.710811
5-3/M820.938561
6-2/M821.525451
6-3/M821.21311
7-1/M820.924211
7-2/M821.104861
9-3-2/M821.486251

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.846541
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.784150.562
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.190060.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.017771
DC3000/delta hrp 6h0.870920.95
DC3000/delta hrp 12h0.916971
DC3000/delta hrp 24h0.923530.363

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.13104

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.939291
Exp 36h1.040851
Exp 60h1.034961

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.056881
Var 0h1.104040.782
Var 12h I row2-row10.914590.705
Var 12h NI row2-row10.918560.82
Var 36h I row2-row11.009471
Var 36h NI row2-row11.230821
Var 60h I row2-row11.09513
Var 60h NI row2-row11.052220.904
Time course 0hI-0hNI1.045380.799
Time course 12hI-12hNI0.936660.556
Time course 36hI-36hNI0.89690.166
Time course 60hI-60hNI0.807610.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.125930.297
transgenic ySAMdc/azygous control (breaker)0.700830.15
transgenic ySAMdc/azygous control (red)1.024311

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.049290.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.804170.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.830661
Manapal/WT (break)1.058151
Manapal/WT (red)0.647150.181