Expression of 1-1-8.2.3.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.35792 | 0.188 |
27DAP/17DAP | 1.14005 | 0.842 |
39DAP/27DAP | 1.06653 | 0.888 |
41DAP/39DAP | 1.27405 | 0.203 |
42DAP/41DAP | 1.59079 | 0.143 |
43DAP/42DAP | 1.04465 | 1 |
47DAP/43DAP | 2.50122 | 0.198 |
52DAP/47DAP | 0.66273 | 0.174 |
57DAP/52DAP | 1.862 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.46228 | 0.014 |
17DAP/reference | 0.91644 | 0.129 |
27DAP/reference | 0.85019 | 0.08 |
39DAP/reference | 1.03955 | 0.534 |
41DAP/reference | 0.94292 | 0.542 |
42DAP/reference | 0.99625 | 0.645 |
43DAP/reference | 0.83446 | 0.464 |
47DAP/reference | 0.92467 | 0.445 |
52DAP/reference | 1.06907 | 0.878 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88133 | 0.251 |
27DAP/17DAP | 0.96235 | 0.821 |
39DAP/27DAP | 1.22784 | 0.558 |
41DAP/39DAP | 1.01383 | 1 |
42DAP/41DAP | 1.10974 | 0.904 |
43DAP/42DAP | 1.05843 | 0.788 |
47DAP/43DAP | 1.16505 | 0.276 |
52DAP/47DAP | 1.05949 | 0.851 |
57DAP/52DAP | 1.52741 | 0.057 |
57DAP/7DAP | 1.39383 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92271 | 0.361 |
17DAP/reference | 0.96719 | 0.338 |
27DAP/reference | 1.11916 | 0.453 |
39DAP/reference | 0.96352 | 0.411 |
41DAP/reference | 1.02957 | 0.949 |
42DAP/reference | 1.01024 | 1 |
43DAP/reference | 0.96997 | 0.403 |
47DAP/reference | 1.2637 | 0.195 |
52DAP/reference | 1.04763 | 0.732 |
57DAP/reference | 1.00638 | 0.719 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22772 | 0.119 |
17DAP/reference | 1.21111 | 0.186 |
27DAP/reference | 1.71338 | 0.016 |
39DAP/reference | 1.315 | 0.09 |
41DAP/reference | 1.24745 | 0.084 |
42DAP/reference | 1.55642 | 0.008 |
43DAP/reference | 1.35487 | 0.164 |
47DAP/reference | 1.1923 | 0.095 |
52DAP/reference | 1.10267 | 0.057 |
57DAP/reference | 0.92559 | 0.18 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98708 | 0.566 |
17DAP/reference | 1.03198 | 0.966 |
27DAP/reference | 0.98218 | 0.624 |
39DAP/reference | 0.91358 | 0.163 |
41DAP/reference | 1.06414 | 0.916 |
42DAP/reference | 1.09799 | 0.347 |
43DAP/reference | 0.93831 | 0.432 |
47DAP/reference | 1.00837 | 0.708 |
52DAP/reference | 0.88616 | 0.303 |
57DAP/reference | 1.04018 | 0.786 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97085 | 1 |
26DAP/20DAP | 1.13939 | 0.813 |
34DAP/26DAP | 0.9379 | 0.945 |
51DAP/34DAP | 1.12178 | 0.775 |
52DAP/51DAP | 0.73706 | 1 |
53DAP/52DAP | 1.36749 | 0.623 |
55DAP/53DAP | 1.02025 | 1 |
57DAP/55DAP | 1.33912 | 0.694 |
62DAP/57DAP | 0.98879 | |
68DAP/62DAP | 1.85897 | 0.285 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.99243 | 0.064 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.29509 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.30665 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.90639 | 0.329 |
Ripe Pepper/Ripe Tomato | 0.7134 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.83789 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09091 | 0.877 |
1-1-2/M82 | 1.2158 | 1 |
12-2/M82 | 0.88509 | 0.955 |
12-4/M82 | 1.33218 | 1 |
1-3/M82 | 1.85591 | 0.248 |
2-1-1/M82 | 1.10283 | 0.689 |
2-1/M82 | 0.6565 | 0.325 |
2-6/M82 | 0.82822 | 1 |
3-2/M82 | 1.67427 | 0.463 |
4-1-1/M82 | 1.52746 | 1 |
4-1/M82 | 1.93342 | 0.853 |
4-3-2/M82 | 1.35836 | 0.241 |
4-3/M82 | 1.71081 | 1 |
5-3/M82 | 0.93856 | 1 |
6-2/M82 | 1.52545 | 1 |
6-3/M82 | 1.2131 | 1 |
7-1/M82 | 0.92421 | 1 |
7-2/M82 | 1.10486 | 1 |
9-3-2/M82 | 1.48625 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.84654 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.78415 | 0.562 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.19006 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01777 | 1 |
DC3000/delta hrp 6h | 0.87092 | 0.95 |
DC3000/delta hrp 12h | 0.91697 | 1 |
DC3000/delta hrp 24h | 0.92353 | 0.363 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.13104 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93929 | 1 |
Exp 36h | 1.04085 | 1 |
Exp 60h | 1.03496 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05688 | 1 |
Var 0h | 1.10404 | 0.782 |
Var 12h I row2-row1 | 0.91459 | 0.705 |
Var 12h NI row2-row1 | 0.91856 | 0.82 |
Var 36h I row2-row1 | 1.00947 | 1 |
Var 36h NI row2-row1 | 1.23082 | 1 |
Var 60h I row2-row1 | 1.09513 | |
Var 60h NI row2-row1 | 1.05222 | 0.904 |
Time course 0hI-0hNI | 1.04538 | 0.799 |
Time course 12hI-12hNI | 0.93666 | 0.556 |
Time course 36hI-36hNI | 0.8969 | 0.166 |
Time course 60hI-60hNI | 0.80761 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.12593 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 0.70083 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.02431 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04929 | 0.194 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.80417 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83066 | 1 |
Manapal/WT (break) | 1.05815 | 1 |
Manapal/WT (red) | 0.64715 | 0.181 |
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