Expression of 1-1-8.2.4.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.079081
27DAP/17DAP0.772760.332
39DAP/27DAP0.582850.255
41DAP/39DAP0.806770.377
42DAP/41DAP1.053971
43DAP/42DAP1.266910.378
47DAP/43DAP0.918890.667
52DAP/47DAP1.091310.856
57DAP/52DAP0.94420.938

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.19050.241
17DAP/reference0.936050.138
27DAP/reference0.927610.129
39DAP/reference0.993730.941
41DAP/reference1.22450.393
42DAP/reference0.870350.151
43DAP/reference1.57250.899
47DAP/reference0.92720.224
52DAP/reference0.808520.064
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.167240.365
27DAP/17DAP0.967730.878
39DAP/27DAP0.599560.051
41DAP/39DAP1.026931
42DAP/41DAP1.125030.893
43DAP/42DAP0.636010.025
47DAP/43DAP1.050060.956
52DAP/47DAP0.912520.666
57DAP/52DAP0.842560.434
57DAP/7DAP0.46429

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.336170.048
17DAP/reference1.256840.026
27DAP/reference1.215440.03
39DAP/reference1.230330.252
41DAP/reference1.240420.117
42DAP/reference1.363190.046
43DAP/reference1.10510.093
47DAP/reference1.142060.413
52DAP/reference1.192220.13
57DAP/reference1.286630.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.987020.848
17DAP/reference1.111140.32
27DAP/reference1.080690.974
39DAP/reference1.111440.657
41DAP/reference1.289760.878
42DAP/reference1.504910.398
43DAP/reference0.938360.352
47DAP/reference0.951690.41
52DAP/reference1.087660.702
57DAP/reference0.810060.032

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference4.002420.017
17DAP/reference1.217960.283
27DAP/reference1.649720.072
39DAP/reference1.211760.075
41DAP/reference1.267830.035
42DAP/reference5.771170.007
43DAP/reference2.71980.008
47DAP/reference0.954480.396
52DAP/reference5.109140.05
57DAP/reference1.976640.032

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.179540.966
26DAP/20DAP0.751030.512
34DAP/26DAP1.089261
51DAP/34DAP0.91060.624
52DAP/51DAP0.800691
53DAP/52DAP0.622930.049
55DAP/53DAP0.754180.135
57DAP/55DAP1.078550.898
62DAP/57DAP2.12817
68DAP/62DAP0.591240.152
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.649430.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.061250.666
Mature Green Tomato/Ripe Tomato6.661980.015
Immature Eggplant/Mature Eggplant0.438550.063
Ripe Pepper/Ripe Tomato3.904420.258
Mature Eggplant/Ripe Tomato3.816440.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.06279
1-1-2/M820.82379
12-2/M820.779730.639
12-4/M820.87685
1-3/M820.72561
2-1-1/M822.24501
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.96488
4-1-1/M820.72533
4-1/M82N/AN/A
4-3-2/M821.88541
4-3/M821.37970.268
5-3/M820.933511
6-2/M82N/AN/A
6-3/M820.93932
7-1/M820.97783
7-2/M821.40958
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.980111
IL2-6/WTpooled0.992051
IL7-5/WTpooled1.389451
IL7-3/WTpooled1.148741
IL12-4/WTpooled1.118790.538
IL1-4/WTpooled0.955660.834
WT/WTpooled1.030141

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.030091

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.944211
DC3000/delta hrp 6h1.177411
DC3000/delta hrp 12h1.483641
DC3000/delta hrp 24h0.653260.045

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.628090.023
DC3000 delta B/DC3000 delta AB0.561940.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.894891
Exp 36h0.790410.539
Exp 60h0.835730.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.94009
Var 0h1.120980.98
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row11.33378
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI0.951340.798
Time course 12hI-12hNI1.123440.906
Time course 36hI-36hNI1.363550.07
Time course 60hI-60hNI2.062330.216

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.109890.331
transgenic ySAMdc/azygous control (breaker)1.464840.172
transgenic ySAMdc/azygous control (red)1.36360.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.834630.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.431950.227

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)4.823030.083
Manapal/WT (break)4.69270.123
Manapal/WT (red)4.878490.126