Expression of 1-1-8.2.4.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07908 | 1 |
27DAP/17DAP | 0.77276 | 0.332 |
39DAP/27DAP | 0.58285 | 0.255 |
41DAP/39DAP | 0.80677 | 0.377 |
42DAP/41DAP | 1.05397 | 1 |
43DAP/42DAP | 1.26691 | 0.378 |
47DAP/43DAP | 0.91889 | 0.667 |
52DAP/47DAP | 1.09131 | 0.856 |
57DAP/52DAP | 0.9442 | 0.938 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1905 | 0.241 |
17DAP/reference | 0.93605 | 0.138 |
27DAP/reference | 0.92761 | 0.129 |
39DAP/reference | 0.99373 | 0.941 |
41DAP/reference | 1.2245 | 0.393 |
42DAP/reference | 0.87035 | 0.151 |
43DAP/reference | 1.5725 | 0.899 |
47DAP/reference | 0.9272 | 0.224 |
52DAP/reference | 0.80852 | 0.064 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16724 | 0.365 |
27DAP/17DAP | 0.96773 | 0.878 |
39DAP/27DAP | 0.59956 | 0.051 |
41DAP/39DAP | 1.02693 | 1 |
42DAP/41DAP | 1.12503 | 0.893 |
43DAP/42DAP | 0.63601 | 0.025 |
47DAP/43DAP | 1.05006 | 0.956 |
52DAP/47DAP | 0.91252 | 0.666 |
57DAP/52DAP | 0.84256 | 0.434 |
57DAP/7DAP | 0.46429 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33617 | 0.048 |
17DAP/reference | 1.25684 | 0.026 |
27DAP/reference | 1.21544 | 0.03 |
39DAP/reference | 1.23033 | 0.252 |
41DAP/reference | 1.24042 | 0.117 |
42DAP/reference | 1.36319 | 0.046 |
43DAP/reference | 1.1051 | 0.093 |
47DAP/reference | 1.14206 | 0.413 |
52DAP/reference | 1.19222 | 0.13 |
57DAP/reference | 1.28663 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98702 | 0.848 |
17DAP/reference | 1.11114 | 0.32 |
27DAP/reference | 1.08069 | 0.974 |
39DAP/reference | 1.11144 | 0.657 |
41DAP/reference | 1.28976 | 0.878 |
42DAP/reference | 1.50491 | 0.398 |
43DAP/reference | 0.93836 | 0.352 |
47DAP/reference | 0.95169 | 0.41 |
52DAP/reference | 1.08766 | 0.702 |
57DAP/reference | 0.81006 | 0.032 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 4.00242 | 0.017 |
17DAP/reference | 1.21796 | 0.283 |
27DAP/reference | 1.64972 | 0.072 |
39DAP/reference | 1.21176 | 0.075 |
41DAP/reference | 1.26783 | 0.035 |
42DAP/reference | 5.77117 | 0.007 |
43DAP/reference | 2.7198 | 0.008 |
47DAP/reference | 0.95448 | 0.396 |
52DAP/reference | 5.10914 | 0.05 |
57DAP/reference | 1.97664 | 0.032 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.17954 | 0.966 |
26DAP/20DAP | 0.75103 | 0.512 |
34DAP/26DAP | 1.08926 | 1 |
51DAP/34DAP | 0.9106 | 0.624 |
52DAP/51DAP | 0.80069 | 1 |
53DAP/52DAP | 0.62293 | 0.049 |
55DAP/53DAP | 0.75418 | 0.135 |
57DAP/55DAP | 1.07855 | 0.898 |
62DAP/57DAP | 2.12817 | |
68DAP/62DAP | 0.59124 | 0.152 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.64943 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.06125 | 0.666 |
Mature Green Tomato/Ripe Tomato | 6.66198 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.43855 | 0.063 |
Ripe Pepper/Ripe Tomato | 3.90442 | 0.258 |
Mature Eggplant/Ripe Tomato | 3.81644 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06279 | |
1-1-2/M82 | 0.82379 | |
12-2/M82 | 0.77973 | 0.639 |
12-4/M82 | 0.87685 | |
1-3/M82 | 0.72561 | |
2-1-1/M82 | 2.24501 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.96488 | |
4-1-1/M82 | 0.72533 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.88541 | |
4-3/M82 | 1.3797 | 0.268 |
5-3/M82 | 0.93351 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.93932 | |
7-1/M82 | 0.97783 | |
7-2/M82 | 1.40958 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98011 | 1 |
IL2-6/WTpooled | 0.99205 | 1 |
IL7-5/WTpooled | 1.38945 | 1 |
IL7-3/WTpooled | 1.14874 | 1 |
IL12-4/WTpooled | 1.11879 | 0.538 |
IL1-4/WTpooled | 0.95566 | 0.834 |
WT/WTpooled | 1.03014 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03009 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94421 | 1 |
DC3000/delta hrp 6h | 1.17741 | 1 |
DC3000/delta hrp 12h | 1.48364 | 1 |
DC3000/delta hrp 24h | 0.65326 | 0.045 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.62809 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.56194 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89489 | 1 |
Exp 36h | 0.79041 | 0.539 |
Exp 60h | 0.83573 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94009 | |
Var 0h | 1.12098 | 0.98 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | 1.33378 | |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 0.95134 | 0.798 |
Time course 12hI-12hNI | 1.12344 | 0.906 |
Time course 36hI-36hNI | 1.36355 | 0.07 |
Time course 60hI-60hNI | 2.06233 | 0.216 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10989 | 0.331 |
transgenic ySAMdc/azygous control (breaker) | 1.46484 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.3636 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.83463 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.43195 | 0.227 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.82303 | 0.083 |
Manapal/WT (break) | 4.6927 | 0.123 |
Manapal/WT (red) | 4.87849 | 0.126 |
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