Expression of 1-1-8.2.4.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.930270.627
27DAP/17DAP1.211810.873
39DAP/27DAP1.074490.944
41DAP/39DAP1.460770.3
42DAP/41DAP1.31680.619
43DAP/42DAP1.125040.968
47DAP/43DAP0.988990.926
52DAP/47DAP0.987470.906
57DAP/52DAP1.080251

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.862420.071
17DAP/reference0.990170.819
27DAP/reference1.020790.894
39DAP/reference0.943780.381
41DAP/reference0.943040.341
42DAP/reference0.965530.218
43DAP/reference1.084850.382
47DAP/reference1.043870.503
52DAP/reference1.182430.102
57DAP/reference1.07520.3

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.283380.151
27DAP/17DAP0.875630.648
39DAP/27DAP1.473940.086
41DAP/39DAP0.998511
42DAP/41DAP1.368920.301
43DAP/42DAP1.258310.061
47DAP/43DAP1.04750.889
52DAP/47DAP1.04810.907
57DAP/52DAP1.059640.806
57DAP/7DAP1.187151

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.253680.076
17DAP/reference1.204780.361
27DAP/reference1.035160.974
39DAP/reference1.249390.014
41DAP/reference1.059990.812
42DAP/reference1.330950.076
43DAP/reference1.220730.024
47DAP/reference1.254720.254
52DAP/reference0.985650.571
57DAP/reference1.025290.799

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.22610.397
17DAP/reference0.963350.51
27DAP/reference1.169290.133
39DAP/reference1.039341
41DAP/reference1.024891
42DAP/reference0.805460.098
43DAP/reference0.919460.336
47DAP/reference0.826410.029
52DAP/reference1.18450.393
57DAP/reference1.025330.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.165530.134
17DAP/reference0.972270.579
27DAP/reference1.107180.26
39DAP/reference1.10440.087
41DAP/reference1.073430.521
42DAP/reference1.113570.391
43DAP/reference1.10190.326
47DAP/reference1.013821
52DAP/reference1.221860.141
57DAP/reference1.10450.268

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.00361
26DAP/20DAP1.487890.228
34DAP/26DAP0.826510.795
51DAP/34DAP1.222340.215
52DAP/51DAP0.923481
53DAP/52DAP0.937940.732
55DAP/53DAP0.886030.577
57DAP/55DAP1.042810.745
62DAP/57DAPN/AN/A
68DAP/62DAP1.107410.422
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.785850.155

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.022351
Mature Green Tomato/Ripe Tomato1.59530.611
Immature Eggplant/Mature Eggplant0.677060.066
Ripe Pepper/Ripe Tomato1.38521
Mature Eggplant/Ripe Tomato1.340720.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.475650.591
1-1-2/M821.159581
12-2/M821.021721
12-4/M821.117011
1-3/M821.498350.248
2-1-1/M820.894650.92
2-1/M820.898070.322
2-6/M821.438020.452
3-2/M821.22813
4-1-1/M821.086371
4-1/M820.80338
4-3-2/M821.555990.284
4-3/M821.417441
5-3/M821.081471
6-2/M820.95741
6-3/M820.963271
7-1/M820.859420.509
7-2/M821.265031
9-3-2/M821.536331

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.017981
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.706740.418
IL12-4/WTpooled0.811030.71
IL1-4/WTpooled0.80972
WT/WTpooled1.047641

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.770370.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.118660.875
DC3000/delta hrp 6h0.933820.95
DC3000/delta hrp 12h0.926281
DC3000/delta hrp 24h0.963470.629

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.265670.42

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.902881
Exp 36h1.047611
Exp 60h0.991721

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.768330.237
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.028540.294
transgenic ySAMdc/azygous control (breaker)1.42740.162
transgenic ySAMdc/azygous control (red)1.08340.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.98640.444

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.791210.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.251650.096
Manapal/WT (break)1.281711
Manapal/WT (red)1.332270.222