Expression of 1-1-8.2.4.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93027 | 0.627 |
27DAP/17DAP | 1.21181 | 0.873 |
39DAP/27DAP | 1.07449 | 0.944 |
41DAP/39DAP | 1.46077 | 0.3 |
42DAP/41DAP | 1.3168 | 0.619 |
43DAP/42DAP | 1.12504 | 0.968 |
47DAP/43DAP | 0.98899 | 0.926 |
52DAP/47DAP | 0.98747 | 0.906 |
57DAP/52DAP | 1.08025 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86242 | 0.071 |
17DAP/reference | 0.99017 | 0.819 |
27DAP/reference | 1.02079 | 0.894 |
39DAP/reference | 0.94378 | 0.381 |
41DAP/reference | 0.94304 | 0.341 |
42DAP/reference | 0.96553 | 0.218 |
43DAP/reference | 1.08485 | 0.382 |
47DAP/reference | 1.04387 | 0.503 |
52DAP/reference | 1.18243 | 0.102 |
57DAP/reference | 1.0752 | 0.3 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28338 | 0.151 |
27DAP/17DAP | 0.87563 | 0.648 |
39DAP/27DAP | 1.47394 | 0.086 |
41DAP/39DAP | 0.99851 | 1 |
42DAP/41DAP | 1.36892 | 0.301 |
43DAP/42DAP | 1.25831 | 0.061 |
47DAP/43DAP | 1.0475 | 0.889 |
52DAP/47DAP | 1.0481 | 0.907 |
57DAP/52DAP | 1.05964 | 0.806 |
57DAP/7DAP | 1.18715 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25368 | 0.076 |
17DAP/reference | 1.20478 | 0.361 |
27DAP/reference | 1.03516 | 0.974 |
39DAP/reference | 1.24939 | 0.014 |
41DAP/reference | 1.05999 | 0.812 |
42DAP/reference | 1.33095 | 0.076 |
43DAP/reference | 1.22073 | 0.024 |
47DAP/reference | 1.25472 | 0.254 |
52DAP/reference | 0.98565 | 0.571 |
57DAP/reference | 1.02529 | 0.799 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2261 | 0.397 |
17DAP/reference | 0.96335 | 0.51 |
27DAP/reference | 1.16929 | 0.133 |
39DAP/reference | 1.03934 | 1 |
41DAP/reference | 1.02489 | 1 |
42DAP/reference | 0.80546 | 0.098 |
43DAP/reference | 0.91946 | 0.336 |
47DAP/reference | 0.82641 | 0.029 |
52DAP/reference | 1.1845 | 0.393 |
57DAP/reference | 1.02533 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16553 | 0.134 |
17DAP/reference | 0.97227 | 0.579 |
27DAP/reference | 1.10718 | 0.26 |
39DAP/reference | 1.1044 | 0.087 |
41DAP/reference | 1.07343 | 0.521 |
42DAP/reference | 1.11357 | 0.391 |
43DAP/reference | 1.1019 | 0.326 |
47DAP/reference | 1.01382 | 1 |
52DAP/reference | 1.22186 | 0.141 |
57DAP/reference | 1.1045 | 0.268 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0036 | 1 |
26DAP/20DAP | 1.48789 | 0.228 |
34DAP/26DAP | 0.82651 | 0.795 |
51DAP/34DAP | 1.22234 | 0.215 |
52DAP/51DAP | 0.92348 | 1 |
53DAP/52DAP | 0.93794 | 0.732 |
55DAP/53DAP | 0.88603 | 0.577 |
57DAP/55DAP | 1.04281 | 0.745 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.10741 | 0.422 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.78585 | 0.155 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.02235 | 1 |
Mature Green Tomato/Ripe Tomato | 1.5953 | 0.611 |
Immature Eggplant/Mature Eggplant | 0.67706 | 0.066 |
Ripe Pepper/Ripe Tomato | 1.3852 | 1 |
Mature Eggplant/Ripe Tomato | 1.34072 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.47565 | 0.591 |
1-1-2/M82 | 1.15958 | 1 |
12-2/M82 | 1.02172 | 1 |
12-4/M82 | 1.11701 | 1 |
1-3/M82 | 1.49835 | 0.248 |
2-1-1/M82 | 0.89465 | 0.92 |
2-1/M82 | 0.89807 | 0.322 |
2-6/M82 | 1.43802 | 0.452 |
3-2/M82 | 1.22813 | |
4-1-1/M82 | 1.08637 | 1 |
4-1/M82 | 0.80338 | |
4-3-2/M82 | 1.55599 | 0.284 |
4-3/M82 | 1.41744 | 1 |
5-3/M82 | 1.08147 | 1 |
6-2/M82 | 0.9574 | 1 |
6-3/M82 | 0.96327 | 1 |
7-1/M82 | 0.85942 | 0.509 |
7-2/M82 | 1.26503 | 1 |
9-3-2/M82 | 1.53633 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.01798 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.70674 | 0.418 |
IL12-4/WTpooled | 0.81103 | 0.71 |
IL1-4/WTpooled | 0.80972 | |
WT/WTpooled | 1.04764 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.77037 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11866 | 0.875 |
DC3000/delta hrp 6h | 0.93382 | 0.95 |
DC3000/delta hrp 12h | 0.92628 | 1 |
DC3000/delta hrp 24h | 0.96347 | 0.629 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.26567 | 0.42 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90288 | 1 |
Exp 36h | 1.04761 | 1 |
Exp 60h | 0.99172 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.76833 | 0.237 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02854 | 0.294 |
transgenic ySAMdc/azygous control (breaker) | 1.4274 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.0834 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9864 | 0.444 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.79121 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.25165 | 0.096 |
Manapal/WT (break) | 1.28171 | 1 |
Manapal/WT (red) | 1.33227 | 0.222 |
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