Expression of 1-1-8.2.7.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.283790.348
27DAP/17DAP0.948230.934
39DAP/27DAP1.562560.152
41DAP/39DAP0.601070.062
42DAP/41DAP1.431720.852
43DAP/42DAP1.267531
47DAP/43DAP1.235010.809
52DAP/47DAP0.804380.525
57DAP/52DAP0.96870.956

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.993570.562
17DAP/reference1.224630.813
27DAP/reference1.8960.024
39DAP/reference1.36740.301
41DAP/reference1.204060.516
42DAP/reference1.760970.001
43DAP/reference1.637340.006
47DAP/reference1.823140.001
52DAP/reference1.46730.018
57DAP/reference1.498040.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.623310.036
27DAP/17DAP0.923840.724
39DAP/27DAP1.251160.086
41DAP/39DAP1.092250.934
42DAP/41DAP1.026330.84
43DAP/42DAP1.086530.122
47DAP/43DAP1.102060.552
52DAP/47DAP1.015650.965
57DAP/52DAP0.804250.266
57DAP/7DAP1.080611

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.308950.06
17DAP/reference1.179010.011
27DAP/reference1.648570.01
39DAP/reference2.762050.005
41DAP/reference1.376750.017
42DAP/reference2.477880.014
43DAP/reference2.782950.006
47DAP/reference2.853230.014
52DAP/reference2.524340.009
57DAP/reference1.859010.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.654240.033
17DAP/reference1.19680.426
27DAP/reference1.508310.029
39DAP/reference2.064710.012
41DAP/reference1.396440.006
42DAP/reference2.279580.008
43DAP/reference1.299710.929
47DAP/reference2.360350.008
52DAP/reference1.173990.057
57DAP/reference0.921850.338

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.024550.918
17DAP/reference1.207860.376
27DAP/reference2.18080.015
39DAP/reference2.398870.005
41DAP/reference1.767070.006
42DAP/reference2.078620.014
43DAP/reference2.042710.016
47DAP/reference1.512340.026
52DAP/reference1.729190.042
57DAP/reference2.935350.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.127581
26DAP/20DAP0.897971
34DAP/26DAP0.777190.093
51DAP/34DAP1.133150.654
52DAP/51DAP0.742680.151
53DAP/52DAP1.184540.25
55DAP/53DAP0.803180.027
57DAP/55DAP0.989770.774
62DAP/57DAP1.003520.994
68DAP/62DAP1.26040.767
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker5.757810.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.706720.187
Mature Green Tomato/Ripe Tomato1.642940.028
Immature Eggplant/Mature Eggplant1.003471
Ripe Pepper/Ripe Tomato0.843981
Mature Eggplant/Ripe Tomato1.079451

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.863330.934
1-1-2/M820.987731
12-2/M820.91340.692
12-4/M821.031441
1-3/M821.407121
2-1-1/M820.838720.465
2-1/M820.986721
2-6/M820.944041
3-2/M820.992720.752
4-1-1/M820.942461
4-1/M821.771110.853
4-3-2/M820.970591
4-3/M820.9851
5-3/M820.982641
6-2/M820.968121
6-3/M821.026151
7-1/M821.011861
7-2/M821.024771
9-3-2/M821.169891

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.98857
IL7-5/WTpooled0.55316
IL7-3/WTpooled0.10689
IL12-4/WTpooled1.211760.785
IL1-4/WTpooled1.024881
WT/WTpooled0.998321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.173611

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.92713
DC3000/delta hrp 6h0.925020.95
DC3000/delta hrp 12h1.154661
DC3000/delta hrp 24h1.044720.62

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.25170.183
DC3000 delta B/DC3000 delta AB1.310020.105

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.423591
Exp 36h1.248811
Exp 60h1.317570.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.022291
Var 0h0.46281
Var 12h I row2-row11.585860.296
Var 12h NI row2-row10.796030.466
Var 36h I row2-row11.072971
Var 36h NI row2-row11.255480.482
Var 60h I row2-row11.103330.562
Var 60h NI row2-row11.070320.904
Time course 0hI-0hNI1.053720.764
Time course 12hI-12hNI1.085650.36
Time course 36hI-36hNI1.093940.19
Time course 60hI-60hNI0.939370.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.092810.699
transgenic ySAMdc/azygous control (breaker)1.048861
transgenic ySAMdc/azygous control (red)1.300910.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.51690.1

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.697670.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.956351
Manapal/WT (break)1.120090.381
Manapal/WT (red)1.440690.222