Expression of 1-1-8.2.7.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28379 | 0.348 |
27DAP/17DAP | 0.94823 | 0.934 |
39DAP/27DAP | 1.56256 | 0.152 |
41DAP/39DAP | 0.60107 | 0.062 |
42DAP/41DAP | 1.43172 | 0.852 |
43DAP/42DAP | 1.26753 | 1 |
47DAP/43DAP | 1.23501 | 0.809 |
52DAP/47DAP | 0.80438 | 0.525 |
57DAP/52DAP | 0.9687 | 0.956 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99357 | 0.562 |
17DAP/reference | 1.22463 | 0.813 |
27DAP/reference | 1.896 | 0.024 |
39DAP/reference | 1.3674 | 0.301 |
41DAP/reference | 1.20406 | 0.516 |
42DAP/reference | 1.76097 | 0.001 |
43DAP/reference | 1.63734 | 0.006 |
47DAP/reference | 1.82314 | 0.001 |
52DAP/reference | 1.4673 | 0.018 |
57DAP/reference | 1.49804 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.62331 | 0.036 |
27DAP/17DAP | 0.92384 | 0.724 |
39DAP/27DAP | 1.25116 | 0.086 |
41DAP/39DAP | 1.09225 | 0.934 |
42DAP/41DAP | 1.02633 | 0.84 |
43DAP/42DAP | 1.08653 | 0.122 |
47DAP/43DAP | 1.10206 | 0.552 |
52DAP/47DAP | 1.01565 | 0.965 |
57DAP/52DAP | 0.80425 | 0.266 |
57DAP/7DAP | 1.08061 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30895 | 0.06 |
17DAP/reference | 1.17901 | 0.011 |
27DAP/reference | 1.64857 | 0.01 |
39DAP/reference | 2.76205 | 0.005 |
41DAP/reference | 1.37675 | 0.017 |
42DAP/reference | 2.47788 | 0.014 |
43DAP/reference | 2.78295 | 0.006 |
47DAP/reference | 2.85323 | 0.014 |
52DAP/reference | 2.52434 | 0.009 |
57DAP/reference | 1.85901 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.65424 | 0.033 |
17DAP/reference | 1.1968 | 0.426 |
27DAP/reference | 1.50831 | 0.029 |
39DAP/reference | 2.06471 | 0.012 |
41DAP/reference | 1.39644 | 0.006 |
42DAP/reference | 2.27958 | 0.008 |
43DAP/reference | 1.29971 | 0.929 |
47DAP/reference | 2.36035 | 0.008 |
52DAP/reference | 1.17399 | 0.057 |
57DAP/reference | 0.92185 | 0.338 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02455 | 0.918 |
17DAP/reference | 1.20786 | 0.376 |
27DAP/reference | 2.1808 | 0.015 |
39DAP/reference | 2.39887 | 0.005 |
41DAP/reference | 1.76707 | 0.006 |
42DAP/reference | 2.07862 | 0.014 |
43DAP/reference | 2.04271 | 0.016 |
47DAP/reference | 1.51234 | 0.026 |
52DAP/reference | 1.72919 | 0.042 |
57DAP/reference | 2.93535 | 0.01 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12758 | 1 |
26DAP/20DAP | 0.89797 | 1 |
34DAP/26DAP | 0.77719 | 0.093 |
51DAP/34DAP | 1.13315 | 0.654 |
52DAP/51DAP | 0.74268 | 0.151 |
53DAP/52DAP | 1.18454 | 0.25 |
55DAP/53DAP | 0.80318 | 0.027 |
57DAP/55DAP | 0.98977 | 0.774 |
62DAP/57DAP | 1.00352 | 0.994 |
68DAP/62DAP | 1.2604 | 0.767 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 5.75781 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.70672 | 0.187 |
Mature Green Tomato/Ripe Tomato | 1.64294 | 0.028 |
Immature Eggplant/Mature Eggplant | 1.00347 | 1 |
Ripe Pepper/Ripe Tomato | 0.84398 | 1 |
Mature Eggplant/Ripe Tomato | 1.07945 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.86333 | 0.934 |
1-1-2/M82 | 0.98773 | 1 |
12-2/M82 | 0.9134 | 0.692 |
12-4/M82 | 1.03144 | 1 |
1-3/M82 | 1.40712 | 1 |
2-1-1/M82 | 0.83872 | 0.465 |
2-1/M82 | 0.98672 | 1 |
2-6/M82 | 0.94404 | 1 |
3-2/M82 | 0.99272 | 0.752 |
4-1-1/M82 | 0.94246 | 1 |
4-1/M82 | 1.77111 | 0.853 |
4-3-2/M82 | 0.97059 | 1 |
4-3/M82 | 0.985 | 1 |
5-3/M82 | 0.98264 | 1 |
6-2/M82 | 0.96812 | 1 |
6-3/M82 | 1.02615 | 1 |
7-1/M82 | 1.01186 | 1 |
7-2/M82 | 1.02477 | 1 |
9-3-2/M82 | 1.16989 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.98857 | |
IL7-5/WTpooled | 0.55316 | |
IL7-3/WTpooled | 0.10689 | |
IL12-4/WTpooled | 1.21176 | 0.785 |
IL1-4/WTpooled | 1.02488 | 1 |
WT/WTpooled | 0.99832 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17361 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92713 | |
DC3000/delta hrp 6h | 0.92502 | 0.95 |
DC3000/delta hrp 12h | 1.15466 | 1 |
DC3000/delta hrp 24h | 1.04472 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.2517 | 0.183 |
DC3000 delta B/DC3000 delta AB | 1.31002 | 0.105 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.42359 | 1 |
Exp 36h | 1.24881 | 1 |
Exp 60h | 1.31757 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02229 | 1 |
Var 0h | 0.4628 | 1 |
Var 12h I row2-row1 | 1.58586 | 0.296 |
Var 12h NI row2-row1 | 0.79603 | 0.466 |
Var 36h I row2-row1 | 1.07297 | 1 |
Var 36h NI row2-row1 | 1.25548 | 0.482 |
Var 60h I row2-row1 | 1.10333 | 0.562 |
Var 60h NI row2-row1 | 1.07032 | 0.904 |
Time course 0hI-0hNI | 1.05372 | 0.764 |
Time course 12hI-12hNI | 1.08565 | 0.36 |
Time course 36hI-36hNI | 1.09394 | 0.19 |
Time course 60hI-60hNI | 0.93937 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09281 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 1.04886 | 1 |
transgenic ySAMdc/azygous control (red) | 1.30091 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.5169 | 0.1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.69767 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.95635 | 1 |
Manapal/WT (break) | 1.12009 | 0.381 |
Manapal/WT (red) | 1.44069 | 0.222 |
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