Expression of 1-1-8.2.7.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05594 | 0.901 |
27DAP/17DAP | 1.01213 | 1 |
39DAP/27DAP | 2.51602 | 0.032 |
41DAP/39DAP | 1.48259 | 0.074 |
42DAP/41DAP | 2.01184 | 0.043 |
43DAP/42DAP | 2.70071 | 0.284 |
47DAP/43DAP | 0.90175 | 0.667 |
52DAP/47DAP | 0.4371 | 0.034 |
57DAP/52DAP | 0.99689 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20555 | 0.23 |
17DAP/reference | 1.14265 | 0.399 |
27DAP/reference | 0.98066 | 0.642 |
39DAP/reference | 1.15433 | 0.062 |
41DAP/reference | 1.10035 | 0.171 |
42DAP/reference | 1.22976 | 0.029 |
43DAP/reference | 1.07269 | 0.547 |
47DAP/reference | 1.17042 | 0.148 |
52DAP/reference | 1.12396 | 0.335 |
57DAP/reference | 1.12768 | 0.259 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89093 | 0.402 |
27DAP/17DAP | 1.27198 | 0.686 |
39DAP/27DAP | 1.48403 | 0.383 |
41DAP/39DAP | 0.76409 | 0.117 |
42DAP/41DAP | 2.02262 | 0.159 |
43DAP/42DAP | 1.36318 | 0.04 |
47DAP/43DAP | 0.94198 | 0.516 |
52DAP/47DAP | 1.12803 | 0.789 |
57DAP/52DAP | 0.83631 | 0.411 |
57DAP/7DAP | 0.89785 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97346 | 0.55 |
17DAP/reference | 0.99715 | 0.599 |
27DAP/reference | 0.97072 | 0.53 |
39DAP/reference | 0.75275 | 0.109 |
41DAP/reference | 0.98024 | 0.589 |
42DAP/reference | 1.0193 | 1 |
43DAP/reference | 1.08296 | 1 |
47DAP/reference | 0.97291 | 0.671 |
52DAP/reference | 0.85491 | 0.137 |
57DAP/reference | 0.89846 | 0.27 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40181 | 0.07 |
17DAP/reference | 1.4074 | 0.011 |
27DAP/reference | 1.20759 | 0.146 |
39DAP/reference | 1.16114 | 0.175 |
41DAP/reference | 1.17272 | 0.587 |
42DAP/reference | 1.25328 | 0.342 |
43DAP/reference | 1.34828 | 0.068 |
47DAP/reference | 1.13445 | 0.232 |
52DAP/reference | 1.46203 | 0.006 |
57DAP/reference | 1.19524 | 0.868 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22252 | 0.659 |
17DAP/reference | 1.01131 | 1 |
27DAP/reference | 0.7933 | |
39DAP/reference | 1.36742 | 0.097 |
41DAP/reference | 1.07683 | |
42DAP/reference | 0.99935 | 1 |
43DAP/reference | 1.40909 | 0.375 |
47DAP/reference | 1.00153 | 0.708 |
52DAP/reference | 0.86783 | 0.415 |
57DAP/reference | 1.06005 | 0.771 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98773 | 1 |
26DAP/20DAP | 1.0285 | 1 |
34DAP/26DAP | 0.90935 | 0.879 |
51DAP/34DAP | 0.66837 | 0.174 |
52DAP/51DAP | 1.18785 | 0.588 |
53DAP/52DAP | 1.2996 | 0.221 |
55DAP/53DAP | 1.64952 | 0.861 |
57DAP/55DAP | 1.17566 | 0.969 |
62DAP/57DAP | 0.91703 | 0.871 |
68DAP/62DAP | 1.88734 | |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 8.38774 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.9284 | 0.539 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.93656 | 0.808 |
Ripe Pepper/Ripe Tomato | 0.96161 | 1 |
Mature Eggplant/Ripe Tomato | 0.33332 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.25362 | 0.551 |
1-1-2/M82 | 1.00996 | 1 |
12-2/M82 | 1.07804 | 1 |
12-4/M82 | 2.04097 | 1 |
1-3/M82 | 2.12523 | 0.248 |
2-1-1/M82 | 0.90013 | 0.565 |
2-1/M82 | 0.98825 | 1 |
2-6/M82 | 1.57997 | 0.329 |
3-2/M82 | 1.03632 | 0.967 |
4-1-1/M82 | 1.60616 | 1 |
4-1/M82 | 2.67484 | 0.853 |
4-3-2/M82 | 2.01381 | 0.241 |
4-3/M82 | 0.97854 | 1 |
5-3/M82 | 0.97769 | 1 |
6-2/M82 | 1.40723 | 1 |
6-3/M82 | 0.98736 | 1 |
7-1/M82 | 0.96504 | 0.803 |
7-2/M82 | 1.32808 | 1 |
9-3-2/M82 | 2.78077 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12067 | 0.365 |
IL2-6/WTpooled | 0.91588 | 0.473 |
IL7-5/WTpooled | 1.60288 | 1 |
IL7-3/WTpooled | 1.04728 | 1 |
IL12-4/WTpooled | 1.38081 | 0.695 |
IL1-4/WTpooled | 0.97031 | 1 |
WT/WTpooled | 0.94744 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.81664 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97297 | 1 |
DC3000/delta hrp 6h | 0.94274 | 0.95 |
DC3000/delta hrp 12h | 1.15352 | 1 |
DC3000/delta hrp 24h | 1.1099 | 0.467 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.86631 | 0.081 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93869 | 1 |
Exp 36h | 0.70065 | 0.419 |
Exp 60h | 0.73722 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.08249 | 1 |
Var 0h | 1.22499 | 0.98 |
Var 12h I row2-row1 | 1.22312 | 0.58 |
Var 12h NI row2-row1 | 0.87769 | |
Var 36h I row2-row1 | 1.63676 | 1 |
Var 36h NI row2-row1 | 0.9396 | 0.791 |
Var 60h I row2-row1 | 0.96952 | 1 |
Var 60h NI row2-row1 | 1.12388 | 0.904 |
Time course 0hI-0hNI | 0.94248 | 0.745 |
Time course 12hI-12hNI | 1.11586 | 0.756 |
Time course 36hI-36hNI | 1.10698 | 0.881 |
Time course 60hI-60hNI | 1.83085 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03833 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 1.29153 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.0001 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97736 | 0.295 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.19402 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.78957 | 0.084 |
Manapal/WT (break) | 1.55216 | 0.13 |
Manapal/WT (red) | 0.94426 | 0.728 |
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