Expression of 1-1-8.2.7.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.055940.901
27DAP/17DAP1.012131
39DAP/27DAP2.516020.032
41DAP/39DAP1.482590.074
42DAP/41DAP2.011840.043
43DAP/42DAP2.700710.284
47DAP/43DAP0.901750.667
52DAP/47DAP0.43710.034
57DAP/52DAP0.996890.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.205550.23
17DAP/reference1.142650.399
27DAP/reference0.980660.642
39DAP/reference1.154330.062
41DAP/reference1.100350.171
42DAP/reference1.229760.029
43DAP/reference1.072690.547
47DAP/reference1.170420.148
52DAP/reference1.123960.335
57DAP/reference1.127680.259

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.890930.402
27DAP/17DAP1.271980.686
39DAP/27DAP1.484030.383
41DAP/39DAP0.764090.117
42DAP/41DAP2.022620.159
43DAP/42DAP1.363180.04
47DAP/43DAP0.941980.516
52DAP/47DAP1.128030.789
57DAP/52DAP0.836310.411
57DAP/7DAP0.897851

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.973460.55
17DAP/reference0.997150.599
27DAP/reference0.970720.53
39DAP/reference0.752750.109
41DAP/reference0.980240.589
42DAP/reference1.01931
43DAP/reference1.082961
47DAP/reference0.972910.671
52DAP/reference0.854910.137
57DAP/reference0.898460.27

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.401810.07
17DAP/reference1.40740.011
27DAP/reference1.207590.146
39DAP/reference1.161140.175
41DAP/reference1.172720.587
42DAP/reference1.253280.342
43DAP/reference1.348280.068
47DAP/reference1.134450.232
52DAP/reference1.462030.006
57DAP/reference1.195240.868

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.222520.659
17DAP/reference1.011311
27DAP/reference0.7933
39DAP/reference1.367420.097
41DAP/reference1.07683
42DAP/reference0.999351
43DAP/reference1.409090.375
47DAP/reference1.001530.708
52DAP/reference0.867830.415
57DAP/reference1.060050.771

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.987731
26DAP/20DAP1.02851
34DAP/26DAP0.909350.879
51DAP/34DAP0.668370.174
52DAP/51DAP1.187850.588
53DAP/52DAP1.29960.221
55DAP/53DAP1.649520.861
57DAP/55DAP1.175660.969
62DAP/57DAP0.917030.871
68DAP/62DAP1.88734
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker8.387740.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.92840.539
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.936560.808
Ripe Pepper/Ripe Tomato0.961611
Mature Eggplant/Ripe Tomato0.333321

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.253620.551
1-1-2/M821.009961
12-2/M821.078041
12-4/M822.040971
1-3/M822.125230.248
2-1-1/M820.900130.565
2-1/M820.988251
2-6/M821.579970.329
3-2/M821.036320.967
4-1-1/M821.606161
4-1/M822.674840.853
4-3-2/M822.013810.241
4-3/M820.978541
5-3/M820.977691
6-2/M821.407231
6-3/M820.987361
7-1/M820.965040.803
7-2/M821.328081
9-3-2/M822.780770.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.120670.365
IL2-6/WTpooled0.915880.473
IL7-5/WTpooled1.602881
IL7-3/WTpooled1.047281
IL12-4/WTpooled1.380810.695
IL1-4/WTpooled0.970311
WT/WTpooled0.947441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.816640.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.972971
DC3000/delta hrp 6h0.942740.95
DC3000/delta hrp 12h1.153521
DC3000/delta hrp 24h1.10990.467

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.866310.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.938691
Exp 36h0.700650.419
Exp 60h0.737220.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.082491
Var 0h1.224990.98
Var 12h I row2-row11.223120.58
Var 12h NI row2-row10.87769
Var 36h I row2-row11.636761
Var 36h NI row2-row10.93960.791
Var 60h I row2-row10.969521
Var 60h NI row2-row11.123880.904
Time course 0hI-0hNI0.942480.745
Time course 12hI-12hNI1.115860.756
Time course 36hI-36hNI1.106980.881
Time course 60hI-60hNI1.830850.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.038330.408
transgenic ySAMdc/azygous control (breaker)1.291530.178
transgenic ySAMdc/azygous control (red)1.00011

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.977360.295

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.194020.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.789570.084
Manapal/WT (break)1.552160.13
Manapal/WT (red)0.944260.728