Expression of 1-1-8.2.7.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.821590.249
27DAP/17DAP1.123840.849
39DAP/27DAP1.063621
41DAP/39DAP0.968920.83
42DAP/41DAP0.841151
43DAP/42DAP1.013590.937
47DAP/43DAP0.907910.687
52DAP/47DAP0.877960.657
57DAP/52DAP1.056391

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.084140.994
17DAP/reference0.647550.007
27DAP/reference0.726730.035
39DAP/reference0.70650.023
41DAP/reference0.599380.01
42DAP/reference0.839810.035
43DAP/reference0.763480.032
47DAP/reference0.743650.004
52DAP/reference0.96540.449
57DAP/reference1.026150.805

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.131570.605
27DAP/17DAP0.922970.748
39DAP/27DAP0.74280.054
41DAP/39DAP1.106861
42DAP/41DAP1.363880.005
43DAP/42DAP0.829320.121
47DAP/43DAP0.879260.447
52DAP/47DAP2.610950.061
57DAP/52DAP2.809680.036
57DAP/7DAP2.329811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.751950.024
17DAP/reference0.871920.108
27DAP/reference1.385570.06
39DAP/reference0.707820.023
41DAP/reference0.880840.174
42DAP/reference1.061640.889
43DAP/reference0.908570.252
47DAP/reference0.931240.222
52DAP/reference1.052060.732
57DAP/reference0.802150.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.246940.695
17DAP/reference0.564180.011
27DAP/reference0.938880.317
39DAP/reference0.912580.189
41DAP/reference0.913280.087
42DAP/reference0.862870.081
43DAP/reference0.494740.004
47DAP/reference0.678110.011
52DAP/reference0.74480.007
57DAP/reference0.538680.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.465860.109
17DAP/reference0.718480.064
27DAP/reference0.810740.045
39DAP/reference0.848880.122
41DAP/reference0.775450.03
42DAP/reference0.833560.019
43DAP/reference0.677660.016
47DAP/reference0.76070.011
52DAP/reference0.677290.174
57DAP/reference0.922320.268

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.862160.997
26DAP/20DAP1.715381
34DAP/26DAP3.948381
51DAP/34DAP1.772170.949
52DAP/51DAP5.310120.033
53DAP/52DAP0.78802
55DAP/53DAP1.636210.039
57DAP/55DAP0.525330.033
62DAP/57DAP2.411190.04
68DAP/62DAP0.698470.769
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.160070.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.98880.835
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.961541
Mature Eggplant/Ripe Tomato1.740110.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.878560.934
1-1-2/M821.119331
12-2/M820.902220.955
12-4/M820.809930.619
1-3/M821.554980.479
2-1-1/M820.946541
2-1/M820.799150.74
2-6/M820.840420.501
3-2/M821.12099
4-1-1/M820.931751
4-1/M821.322661
4-3-2/M821.248730.284
4-3/M821.04641
5-3/M821.274910.572
6-2/M820.906420.481
6-3/M821.002131
7-1/M820.884820.803
7-2/M821.45919
9-3-2/M821.171471

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.983631
IL2-6/WTpooled0.499570.358
IL7-5/WTpooled1.336440.792
IL7-3/WTpooled1.412211
IL12-4/WTpooled1.1490.695
IL1-4/WTpooled0.761980.476
WT/WTpooled0.96981

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.200730.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.066370.921
DC3000/delta hrp 6h0.970540.95
DC3000/delta hrp 12h0.959671
DC3000/delta hrp 24h1.317670.283

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.540930.06
DC3000 delta B/DC3000 delta AB1.675920.179

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.042241
Var 0h1.046831
Var 12h I row2-row10.747790.467
Var 12h NI row2-row11.112381
Var 36h I row2-row11.164721
Var 36h NI row2-row11.367850.276
Var 60h I row2-row10.698070.285
Var 60h NI row2-row11.002411
Time course 0hI-0hNI0.878620.352
Time course 12hI-12hNI1.059111
Time course 36hI-36hNI1.063250.857
Time course 60hI-60hNI1.659610.025

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.170770.384
transgenic ySAMdc/azygous control (breaker)0.867730.15
transgenic ySAMdc/azygous control (red)0.89951

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.06230.395

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.373850.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.823131
Manapal/WT (break)0.767470.333
Manapal/WT (red)1.36620.413