Expression of 1-1-8.2.7.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82159 | 0.249 |
27DAP/17DAP | 1.12384 | 0.849 |
39DAP/27DAP | 1.06362 | 1 |
41DAP/39DAP | 0.96892 | 0.83 |
42DAP/41DAP | 0.84115 | 1 |
43DAP/42DAP | 1.01359 | 0.937 |
47DAP/43DAP | 0.90791 | 0.687 |
52DAP/47DAP | 0.87796 | 0.657 |
57DAP/52DAP | 1.05639 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08414 | 0.994 |
17DAP/reference | 0.64755 | 0.007 |
27DAP/reference | 0.72673 | 0.035 |
39DAP/reference | 0.7065 | 0.023 |
41DAP/reference | 0.59938 | 0.01 |
42DAP/reference | 0.83981 | 0.035 |
43DAP/reference | 0.76348 | 0.032 |
47DAP/reference | 0.74365 | 0.004 |
52DAP/reference | 0.9654 | 0.449 |
57DAP/reference | 1.02615 | 0.805 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13157 | 0.605 |
27DAP/17DAP | 0.92297 | 0.748 |
39DAP/27DAP | 0.7428 | 0.054 |
41DAP/39DAP | 1.10686 | 1 |
42DAP/41DAP | 1.36388 | 0.005 |
43DAP/42DAP | 0.82932 | 0.121 |
47DAP/43DAP | 0.87926 | 0.447 |
52DAP/47DAP | 2.61095 | 0.061 |
57DAP/52DAP | 2.80968 | 0.036 |
57DAP/7DAP | 2.32981 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.75195 | 0.024 |
17DAP/reference | 0.87192 | 0.108 |
27DAP/reference | 1.38557 | 0.06 |
39DAP/reference | 0.70782 | 0.023 |
41DAP/reference | 0.88084 | 0.174 |
42DAP/reference | 1.06164 | 0.889 |
43DAP/reference | 0.90857 | 0.252 |
47DAP/reference | 0.93124 | 0.222 |
52DAP/reference | 1.05206 | 0.732 |
57DAP/reference | 0.80215 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24694 | 0.695 |
17DAP/reference | 0.56418 | 0.011 |
27DAP/reference | 0.93888 | 0.317 |
39DAP/reference | 0.91258 | 0.189 |
41DAP/reference | 0.91328 | 0.087 |
42DAP/reference | 0.86287 | 0.081 |
43DAP/reference | 0.49474 | 0.004 |
47DAP/reference | 0.67811 | 0.011 |
52DAP/reference | 0.7448 | 0.007 |
57DAP/reference | 0.53868 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.46586 | 0.109 |
17DAP/reference | 0.71848 | 0.064 |
27DAP/reference | 0.81074 | 0.045 |
39DAP/reference | 0.84888 | 0.122 |
41DAP/reference | 0.77545 | 0.03 |
42DAP/reference | 0.83356 | 0.019 |
43DAP/reference | 0.67766 | 0.016 |
47DAP/reference | 0.7607 | 0.011 |
52DAP/reference | 0.67729 | 0.174 |
57DAP/reference | 0.92232 | 0.268 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.86216 | 0.997 |
26DAP/20DAP | 1.71538 | 1 |
34DAP/26DAP | 3.94838 | 1 |
51DAP/34DAP | 1.77217 | 0.949 |
52DAP/51DAP | 5.31012 | 0.033 |
53DAP/52DAP | 0.78802 | |
55DAP/53DAP | 1.63621 | 0.039 |
57DAP/55DAP | 0.52533 | 0.033 |
62DAP/57DAP | 2.41119 | 0.04 |
68DAP/62DAP | 0.69847 | 0.769 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.16007 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.9888 | 0.835 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.96154 | 1 |
Mature Eggplant/Ripe Tomato | 1.74011 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87856 | 0.934 |
1-1-2/M82 | 1.11933 | 1 |
12-2/M82 | 0.90222 | 0.955 |
12-4/M82 | 0.80993 | 0.619 |
1-3/M82 | 1.55498 | 0.479 |
2-1-1/M82 | 0.94654 | 1 |
2-1/M82 | 0.79915 | 0.74 |
2-6/M82 | 0.84042 | 0.501 |
3-2/M82 | 1.12099 | |
4-1-1/M82 | 0.93175 | 1 |
4-1/M82 | 1.32266 | 1 |
4-3-2/M82 | 1.24873 | 0.284 |
4-3/M82 | 1.0464 | 1 |
5-3/M82 | 1.27491 | 0.572 |
6-2/M82 | 0.90642 | 0.481 |
6-3/M82 | 1.00213 | 1 |
7-1/M82 | 0.88482 | 0.803 |
7-2/M82 | 1.45919 | |
9-3-2/M82 | 1.17147 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98363 | 1 |
IL2-6/WTpooled | 0.49957 | 0.358 |
IL7-5/WTpooled | 1.33644 | 0.792 |
IL7-3/WTpooled | 1.41221 | 1 |
IL12-4/WTpooled | 1.149 | 0.695 |
IL1-4/WTpooled | 0.76198 | 0.476 |
WT/WTpooled | 0.9698 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.20073 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06637 | 0.921 |
DC3000/delta hrp 6h | 0.97054 | 0.95 |
DC3000/delta hrp 12h | 0.95967 | 1 |
DC3000/delta hrp 24h | 1.31767 | 0.283 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.54093 | 0.06 |
DC3000 delta B/DC3000 delta AB | 1.67592 | 0.179 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04224 | 1 |
Var 0h | 1.04683 | 1 |
Var 12h I row2-row1 | 0.74779 | 0.467 |
Var 12h NI row2-row1 | 1.11238 | 1 |
Var 36h I row2-row1 | 1.16472 | 1 |
Var 36h NI row2-row1 | 1.36785 | 0.276 |
Var 60h I row2-row1 | 0.69807 | 0.285 |
Var 60h NI row2-row1 | 1.00241 | 1 |
Time course 0hI-0hNI | 0.87862 | 0.352 |
Time course 12hI-12hNI | 1.05911 | 1 |
Time course 36hI-36hNI | 1.06325 | 0.857 |
Time course 60hI-60hNI | 1.65961 | 0.025 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.17077 | 0.384 |
transgenic ySAMdc/azygous control (breaker) | 0.86773 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.8995 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0623 | 0.395 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.37385 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.82313 | 1 |
Manapal/WT (break) | 0.76747 | 0.333 |
Manapal/WT (red) | 1.3662 | 0.413 |
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