Expression of 1-1-8.2.7.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.45393 | 0.019 |
27DAP/17DAP | 0.97495 | 0.992 |
39DAP/27DAP | 0.8968 | 0.631 |
41DAP/39DAP | 1.25497 | 0.63 |
42DAP/41DAP | 1.03967 | 1 |
43DAP/42DAP | 0.83271 | 0.786 |
47DAP/43DAP | 1.05997 | 0.746 |
52DAP/47DAP | 0.80651 | 0.54 |
57DAP/52DAP | 0.74022 | 0.613 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09346 | 0.403 |
17DAP/reference | 0.68181 | 0.008 |
27DAP/reference | 0.81682 | 0.141 |
39DAP/reference | 0.84021 | 0.041 |
41DAP/reference | 0.71445 | 0.014 |
42DAP/reference | 0.87416 | 0.046 |
43DAP/reference | 0.97038 | 0.576 |
47DAP/reference | 0.9028 | 0.098 |
52DAP/reference | 1.07245 | 0.32 |
57DAP/reference | 1.22356 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.71187 | 0.046 |
27DAP/17DAP | 0.97815 | 0.887 |
39DAP/27DAP | 1.13965 | 0.565 |
41DAP/39DAP | 1.03039 | 0.887 |
42DAP/41DAP | 0.93483 | 0.584 |
43DAP/42DAP | 0.92043 | 0.351 |
47DAP/43DAP | 0.94731 | 0.757 |
52DAP/47DAP | 1.09984 | 0.713 |
57DAP/52DAP | 1.3993 | 0.055 |
57DAP/7DAP | 0.84913 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92474 | 0.296 |
17DAP/reference | 0.9399 | 0.22 |
27DAP/reference | 1.00471 | 1 |
39DAP/reference | 0.96163 | 0.354 |
41DAP/reference | 1.04231 | 0.539 |
42DAP/reference | 1.09172 | 0.686 |
43DAP/reference | 1.07436 | 0.226 |
47DAP/reference | 1.03437 | 0.854 |
52DAP/reference | 1.20098 | 0.015 |
57DAP/reference | 1.15958 | 0.049 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87352 | 0.134 |
17DAP/reference | 0.68513 | 0.009 |
27DAP/reference | 0.91124 | 0.188 |
39DAP/reference | 0.84701 | 0.036 |
41DAP/reference | 1.05949 | 0.846 |
42DAP/reference | 0.91504 | 0.055 |
43DAP/reference | 0.76093 | 0.075 |
47DAP/reference | 0.7787 | 0.015 |
52DAP/reference | 0.80688 | 0.016 |
57DAP/reference | 0.60972 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88896 | 0.119 |
17DAP/reference | 0.89189 | 0.234 |
27DAP/reference | 0.97111 | 0.539 |
39DAP/reference | 1.08539 | 0.218 |
41DAP/reference | 1.06188 | 0.486 |
42DAP/reference | 1.09609 | 0.194 |
43DAP/reference | 0.97985 | 0.614 |
47DAP/reference | 0.91968 | 0.286 |
52DAP/reference | 0.86493 | 0.204 |
57DAP/reference | 1.34576 | 0.034 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97786 | 1 |
26DAP/20DAP | 0.93427 | 1 |
34DAP/26DAP | 1.18256 | 1 |
51DAP/34DAP | 0.72406 | 0.286 |
52DAP/51DAP | 1.42472 | 0.163 |
53DAP/52DAP | 0.87726 | 0.712 |
55DAP/53DAP | 1.50926 | 0.115 |
57DAP/55DAP | 0.86132 | 0.375 |
62DAP/57DAP | 1.49454 | 0.723 |
68DAP/62DAP | 1.21347 | 0.481 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.81994 | 0.102 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.78491 | 0.236 |
Mature Green Tomato/Ripe Tomato | 0.69646 | 0.317 |
Immature Eggplant/Mature Eggplant | 2.05659 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.65085 | 1 |
Mature Eggplant/Ripe Tomato | 1.01727 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97666 | 0.934 |
1-1-2/M82 | 1.08426 | |
12-2/M82 | 1.08616 | |
12-4/M82 | 1.1069 | 1 |
1-3/M82 | 1.01277 | |
2-1-1/M82 | 1.19442 | |
2-1/M82 | 1.21741 | 1 |
2-6/M82 | 1.0551 | 1 |
3-2/M82 | 1.07483 | |
4-1-1/M82 | 1.03316 | |
4-1/M82 | 0.98656 | 1 |
4-3-2/M82 | 0.9035 | 0.698 |
4-3/M82 | 1.25062 | 1 |
5-3/M82 | 0.85025 | |
6-2/M82 | 1.51639 | |
6-3/M82 | 0.86268 | |
7-1/M82 | 1.14509 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.21647 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.87588 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.97162 | 1 |
IL1-4/WTpooled | 1.15198 | 1 |
WT/WTpooled | 1.03468 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9902 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04245 | 0.921 |
DC3000/delta hrp 6h | 1.13198 | 1 |
DC3000/delta hrp 12h | 0.86521 | 1 |
DC3000/delta hrp 24h | 0.90402 | 0.338 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.98735 | |
DC3000 delta B/DC3000 delta AB | 0.81175 | 0.029 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04435 | 1 |
Var 0h | 0.48786 | 1 |
Var 12h I row2-row1 | 1.00504 | 1 |
Var 12h NI row2-row1 | 0.91023 | 0.36 |
Var 36h I row2-row1 | 0.95172 | 0.805 |
Var 36h NI row2-row1 | 1.03981 | 1 |
Var 60h I row2-row1 | 1.00962 | 1 |
Var 60h NI row2-row1 | 1.09781 | 0.904 |
Time course 0hI-0hNI | 0.92117 | 0.404 |
Time course 12hI-12hNI | 0.88994 | 0.05 |
Time course 36hI-36hNI | 0.87351 | 0.211 |
Time course 60hI-60hNI | 0.58533 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94855 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.89646 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.06369 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05008 | 0.135 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89389 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0223 | 1 |
Manapal/WT (break) | 0.80849 | 0.333 |
Manapal/WT (red) | 0.88454 | 0.503 |
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