Expression of 1-1-8.2.8.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.046410.042
27DAP/17DAP1.188910.809
39DAP/27DAP1.46510.22
41DAP/39DAP0.742720.177
42DAP/41DAP0.94871
43DAP/42DAP0.910970.788
47DAP/43DAP0.838230.492
52DAP/47DAP0.69010.125
57DAP/52DAP0.939640.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.13020.241
17DAP/reference1.106180.508
27DAP/reference0.94640.304
39DAP/reference1.023590.706
41DAP/reference1.202490.015
42DAP/reference1.095810.035
43DAP/reference1.113850.133
47DAP/reference1.015541
52DAP/reference1.113670.84
57DAP/reference0.899570.071

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.311310.069
27DAP/17DAP1.176320.367
39DAP/27DAP0.96240.775
41DAP/39DAP1.108251
42DAP/41DAP1.012530.887
43DAP/42DAP0.871220.157
47DAP/43DAP0.89460.043
52DAP/47DAP1.250940.543
57DAP/52DAP0.833480.216
57DAP/7DAP1.039241

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.831880.183
17DAP/reference1.170060.754
27DAP/reference0.65860.01
39DAP/reference0.911660.23
41DAP/reference0.947380.469
42DAP/reference0.930410.436
43DAP/reference1.046990.457
47DAP/reference0.877130.066
52DAP/reference1.147080.781
57DAP/reference1.230310.17

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.203040.106
17DAP/reference1.268570.028
27DAP/reference1.198060.08
39DAP/reference1.277480.016
41DAP/reference1.250350.215
42DAP/reference1.060390.915
43DAP/reference1.377010.121
47DAP/reference1.015341
52DAP/reference1.313380.009
57DAP/reference1.276940.042

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.818910.147
17DAP/reference1.040630.685
27DAP/reference0.83363
39DAP/reference0.873210.328
41DAP/reference1.016651
42DAP/reference1.145020.529
43DAP/reference1.09606
47DAP/reference0.986090.574
52DAP/reference0.889160.303
57DAP/reference0.796320.053

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.151250.966
26DAP/20DAP0.867410.512
34DAP/26DAP1.126140.542
51DAP/34DAP1.017020.978
52DAP/51DAP1.129730.218
53DAP/52DAP0.958410.844
55DAP/53DAP1.002841
57DAP/55DAP0.877720.403
62DAP/57DAP0.887230.466
68DAP/62DAP1.330610.707
68DAP/14DAP0.920531

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.66910.026

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.8360.295
Mature Green Tomato/Ripe Tomato3.383680.014
Immature Eggplant/Mature Eggplant0.71940.071
Ripe Pepper/Ripe Tomato1.185481
Mature Eggplant/Ripe Tomato0.574441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.012611
1-1-2/M821.084011
12-2/M821.058681
12-4/M821.13731
1-3/M820.981791
2-1-1/M821.278570.689
2-1/M820.979471
2-6/M821.045720.594
3-2/M820.969581
4-1-1/M821.396740.977
4-1/M821.497280.512
4-3-2/M821.207181
4-3/M821.07281
5-3/M820.907041
6-2/M821.162781
6-3/M820.971241
7-1/M820.841090.803
7-2/M820.904250.414
9-3-2/M821.261521

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.129451
IL2-6/WTpooled0.918591
IL7-5/WTpooled0.527791
IL7-3/WTpooled1.075771
IL12-4/WTpooled0.748610.478
IL1-4/WTpooled1.067970.426
WT/WTpooled0.901191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.002361

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.989871
DC3000/delta hrp 6h1.029681
DC3000/delta hrp 12h1.268331
DC3000/delta hrp 24h0.910320.354

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.924380.151
DC3000 delta B/DC3000 delta AB0.942490.456

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.888261
Exp 36h0.722890.449
Exp 60h0.850260.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.038621
Var 0h1.055361
Var 12h I row2-row10.873250.338
Var 12h NI row2-row10.952290.82
Var 36h I row2-row11.061351
Var 36h NI row2-row11.144620.482
Var 60h I row2-row10.900040.374
Var 60h NI row2-row10.951061
Time course 0hI-0hNI1.043650.852
Time course 12hI-12hNI0.994461
Time course 36hI-36hNI1.019421
Time course 60hI-60hNI0.553970.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.0750.278
transgenic ySAMdc/azygous control (breaker)1.311790.178
transgenic ySAMdc/azygous control (red)1.126380.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.973110.263

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.290550.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.147750.083
Manapal/WT (break)1.627810.126
Manapal/WT (red)1.301450.134