Expression of 1-1-8.2.8.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.04641 | 0.042 |
27DAP/17DAP | 1.18891 | 0.809 |
39DAP/27DAP | 1.4651 | 0.22 |
41DAP/39DAP | 0.74272 | 0.177 |
42DAP/41DAP | 0.9487 | 1 |
43DAP/42DAP | 0.91097 | 0.788 |
47DAP/43DAP | 0.83823 | 0.492 |
52DAP/47DAP | 0.6901 | 0.125 |
57DAP/52DAP | 0.93964 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1302 | 0.241 |
17DAP/reference | 1.10618 | 0.508 |
27DAP/reference | 0.9464 | 0.304 |
39DAP/reference | 1.02359 | 0.706 |
41DAP/reference | 1.20249 | 0.015 |
42DAP/reference | 1.09581 | 0.035 |
43DAP/reference | 1.11385 | 0.133 |
47DAP/reference | 1.01554 | 1 |
52DAP/reference | 1.11367 | 0.84 |
57DAP/reference | 0.89957 | 0.071 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.31131 | 0.069 |
27DAP/17DAP | 1.17632 | 0.367 |
39DAP/27DAP | 0.9624 | 0.775 |
41DAP/39DAP | 1.10825 | 1 |
42DAP/41DAP | 1.01253 | 0.887 |
43DAP/42DAP | 0.87122 | 0.157 |
47DAP/43DAP | 0.8946 | 0.043 |
52DAP/47DAP | 1.25094 | 0.543 |
57DAP/52DAP | 0.83348 | 0.216 |
57DAP/7DAP | 1.03924 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83188 | 0.183 |
17DAP/reference | 1.17006 | 0.754 |
27DAP/reference | 0.6586 | 0.01 |
39DAP/reference | 0.91166 | 0.23 |
41DAP/reference | 0.94738 | 0.469 |
42DAP/reference | 0.93041 | 0.436 |
43DAP/reference | 1.04699 | 0.457 |
47DAP/reference | 0.87713 | 0.066 |
52DAP/reference | 1.14708 | 0.781 |
57DAP/reference | 1.23031 | 0.17 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20304 | 0.106 |
17DAP/reference | 1.26857 | 0.028 |
27DAP/reference | 1.19806 | 0.08 |
39DAP/reference | 1.27748 | 0.016 |
41DAP/reference | 1.25035 | 0.215 |
42DAP/reference | 1.06039 | 0.915 |
43DAP/reference | 1.37701 | 0.121 |
47DAP/reference | 1.01534 | 1 |
52DAP/reference | 1.31338 | 0.009 |
57DAP/reference | 1.27694 | 0.042 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81891 | 0.147 |
17DAP/reference | 1.04063 | 0.685 |
27DAP/reference | 0.83363 | |
39DAP/reference | 0.87321 | 0.328 |
41DAP/reference | 1.01665 | 1 |
42DAP/reference | 1.14502 | 0.529 |
43DAP/reference | 1.09606 | |
47DAP/reference | 0.98609 | 0.574 |
52DAP/reference | 0.88916 | 0.303 |
57DAP/reference | 0.79632 | 0.053 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15125 | 0.966 |
26DAP/20DAP | 0.86741 | 0.512 |
34DAP/26DAP | 1.12614 | 0.542 |
51DAP/34DAP | 1.01702 | 0.978 |
52DAP/51DAP | 1.12973 | 0.218 |
53DAP/52DAP | 0.95841 | 0.844 |
55DAP/53DAP | 1.00284 | 1 |
57DAP/55DAP | 0.87772 | 0.403 |
62DAP/57DAP | 0.88723 | 0.466 |
68DAP/62DAP | 1.33061 | 0.707 |
68DAP/14DAP | 0.92053 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.6691 | 0.026 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.836 | 0.295 |
Mature Green Tomato/Ripe Tomato | 3.38368 | 0.014 |
Immature Eggplant/Mature Eggplant | 0.7194 | 0.071 |
Ripe Pepper/Ripe Tomato | 1.18548 | 1 |
Mature Eggplant/Ripe Tomato | 0.57444 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01261 | 1 |
1-1-2/M82 | 1.08401 | 1 |
12-2/M82 | 1.05868 | 1 |
12-4/M82 | 1.1373 | 1 |
1-3/M82 | 0.98179 | 1 |
2-1-1/M82 | 1.27857 | 0.689 |
2-1/M82 | 0.97947 | 1 |
2-6/M82 | 1.04572 | 0.594 |
3-2/M82 | 0.96958 | 1 |
4-1-1/M82 | 1.39674 | 0.977 |
4-1/M82 | 1.49728 | 0.512 |
4-3-2/M82 | 1.20718 | 1 |
4-3/M82 | 1.0728 | 1 |
5-3/M82 | 0.90704 | 1 |
6-2/M82 | 1.16278 | 1 |
6-3/M82 | 0.97124 | 1 |
7-1/M82 | 0.84109 | 0.803 |
7-2/M82 | 0.90425 | 0.414 |
9-3-2/M82 | 1.26152 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12945 | 1 |
IL2-6/WTpooled | 0.91859 | 1 |
IL7-5/WTpooled | 0.52779 | 1 |
IL7-3/WTpooled | 1.07577 | 1 |
IL12-4/WTpooled | 0.74861 | 0.478 |
IL1-4/WTpooled | 1.06797 | 0.426 |
WT/WTpooled | 0.90119 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00236 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98987 | 1 |
DC3000/delta hrp 6h | 1.02968 | 1 |
DC3000/delta hrp 12h | 1.26833 | 1 |
DC3000/delta hrp 24h | 0.91032 | 0.354 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.92438 | 0.151 |
DC3000 delta B/DC3000 delta AB | 0.94249 | 0.456 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.88826 | 1 |
Exp 36h | 0.72289 | 0.449 |
Exp 60h | 0.85026 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03862 | 1 |
Var 0h | 1.05536 | 1 |
Var 12h I row2-row1 | 0.87325 | 0.338 |
Var 12h NI row2-row1 | 0.95229 | 0.82 |
Var 36h I row2-row1 | 1.06135 | 1 |
Var 36h NI row2-row1 | 1.14462 | 0.482 |
Var 60h I row2-row1 | 0.90004 | 0.374 |
Var 60h NI row2-row1 | 0.95106 | 1 |
Time course 0hI-0hNI | 1.04365 | 0.852 |
Time course 12hI-12hNI | 0.99446 | 1 |
Time course 36hI-36hNI | 1.01942 | 1 |
Time course 60hI-60hNI | 0.55397 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.075 | 0.278 |
transgenic ySAMdc/azygous control (breaker) | 1.31179 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.12638 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97311 | 0.263 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.29055 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.14775 | 0.083 |
Manapal/WT (break) | 1.62781 | 0.126 |
Manapal/WT (red) | 1.30145 | 0.134 |
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