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Expression of 1-1-8.2.8.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.201830.545
27DAP/17DAP1.129560.849
39DAP/27DAP0.887710.482
41DAP/39DAP1.130890.753
42DAP/41DAP1.210980.587
43DAP/42DAP1.118210.991
47DAP/43DAP0.993590.92
52DAP/47DAP0.73490.303
57DAP/52DAP0.937950.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.886610.182
17DAP/reference1.145770.019
27DAP/reference1.035510.771
39DAP/reference1.122830.037
41DAP/reference1.08120.203
42DAP/reference0.914930.027
43DAP/reference0.96850.519
47DAP/reference1.012041
52DAP/reference1.050270.766
57DAP/reference0.994340.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.028980.65
27DAP/17DAP0.993120.854
39DAP/27DAP1.055310.659
41DAP/39DAP1.029560.753
42DAP/41DAP1.015681
43DAP/42DAP1.01550.585
47DAP/43DAP1.026980.749
52DAP/47DAP0.932030.575
57DAP/52DAP0.992240.845
57DAP/7DAP1.1232N/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.018341
17DAP/reference0.972380.389
27DAP/reference1.297260.01
39DAP/reference1.44470.038
41DAP/reference1.432820.032
42DAP/reference1.648860.013
43DAP/reference1.102560.511
47DAP/reference1.151320.254
52DAP/reference1.180020.105
57DAP/reference1.538430.024

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.943370.399
17DAP/reference1.084420.357
27DAP/reference1.019930.988
39DAP/reference1.162080.188
41DAP/reference0.92750.127
42DAP/reference0.963970.392
43DAP/reference1.205550.176
47DAP/reference1.020450.816
52DAP/reference1.102220.046
57DAP/reference1.090640.296

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.987520.607
17DAP/reference0.963250.519
27DAP/reference1.023661
39DAP/reference1.176760.055
41DAP/reference1.075950.605
42DAP/reference1.035390.818
43DAP/reference0.85330.158
47DAP/reference1.019130.966
52DAP/reference0.925770.529
57DAP/reference1.119390.522

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.055310.966
26DAP/20DAP0.976471
34DAP/26DAP0.994351
51DAP/34DAP1.002621
52DAP/51DAP0.972521
53DAP/52DAP0.941420.848
55DAP/53DAP1.040390.806
57DAP/55DAP0.990370.927
62DAP/57DAP1.221790.057
68DAP/62DAP1.588340.367
68DAP/14DAP1.837450.453

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.112080.391

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.641780.155
Mature Green Tomato/Ripe Tomato1.124030.523
Immature Eggplant/Mature Eggplant1.965090.05
Ripe Pepper/Ripe Tomato2.84060.256
Mature Eggplant/Ripe Tomato3.046520.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.919310.944
1-1-2/M820.932171
12-2/M821.046291
12-4/M821.026781
1-3/M821.007911
2-1-1/M821.035591
2-1/M820.865250.74
2-6/M820.954760.501
3-2/M821.067610.463
4-1-1/M821.040341
4-1/M820.984191
4-3-2/M821.096031
4-3/M821.421811
5-3/M821.039331
6-2/M820.980651
6-3/M821.121411
7-1/M820.967981
7-2/M820.981871
9-3-2/M820.925371

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.960271
IL2-6/WTpooled1.269990.419
IL7-5/WTpooled0.871191
IL7-3/WTpooled0.93790.418
IL12-4/WTpooled0.875971
IL1-4/WTpooled1.074731
WT/WTpooled0.851211

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.035171

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.094830.692
DC3000/delta hrp 6h0.96810.95
DC3000/delta hrp 12h0.999541
DC3000/delta hrp 24h0.932540.43

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.019250.598
DC3000 delta B/DC3000 delta AB1.050390.498

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.917911
Exp 36h1.221621
Exp 60h1.006820.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.949511
Var 0h1.097330.98
Var 12h I row2-row11.237560.58
Var 12h NI row2-row10.973430.82
Var 36h I row2-row10.98671
Var 36h NI row2-row10.900390.61
Var 60h I row2-row11.290090.562
Var 60h NI row2-row11.171850.904
Time course 0hI-0hNI1.092210.537
Time course 12hI-12hNI1.072850.56
Time course 36hI-36hNI1.116880.08
Time course 60hI-60hNI1.224230.025

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.027380.612
transgenic ySAMdc/azygous control (breaker)0.595510.134
transgenic ySAMdc/azygous control (red)0.887481

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.964670.404

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.372960.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.846271
Manapal/WT (break)0.787220.333
Manapal/WT (red)1.324380.222