Expression of 1-1-8.2.8.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009320.839
27DAP/17DAP1.214430.849
39DAP/27DAP0.912450.573
41DAP/39DAP1.647840.227
42DAP/41DAP0.900481
43DAP/42DAP1.086481
47DAP/43DAP0.869110.58
52DAP/47DAP0.924560.765
57DAP/52DAP1.003010.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.978460.562
17DAP/reference0.95675
27DAP/reference0.960020.369
39DAP/reference1.00676
41DAP/reference0.876350.114
42DAP/reference0.921320.028
43DAP/reference0.99820.924
47DAP/reference0.99870.72
52DAP/reference0.871860.065
57DAP/reference0.926470.324

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.673660.046
27DAP/17DAP0.869520.58
39DAP/27DAP1.324510.069
41DAP/39DAP0.864360.117
42DAP/41DAP1.154050.234
43DAP/42DAP1.161080.212
47DAP/43DAP0.947510.743
52DAP/47DAP1.233910.46
57DAP/52DAP0.915070.558
57DAP/7DAP0.675921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.420070.576
17DAP/reference1.524950.18
27DAP/reference0.910110.303
39DAP/reference1.089490.96
41DAP/reference1.046330.791
42DAP/reference1.19790.686
43DAP/reference1.267020.408
47DAP/reference1.010231
52DAP/reference0.975660.477
57DAP/reference1.326640.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.009370.894
17DAP/reference1.011750.874
27DAP/reference0.957580.34
39DAP/reference0.996470.661
41DAP/reference1.024631
42DAP/reference0.934740.321
43DAP/reference0.948250.285
47DAP/reference0.901950.027
52DAP/reference1.003391
57DAP/reference1.023320.908

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.98702
17DAP/reference1.011120.988
27DAP/reference1.179930.531
39DAP/reference1.025990.33
41DAP/reference0.923120.56
42DAP/reference1.083690.701
43DAP/reference0.778620.116
47DAP/reference1.055360.265
52DAP/reference1.104510.393
57DAP/reference0.795130.07

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.994551
26DAP/20DAP0.879350.512
34DAP/26DAP1.156510.542
51DAP/34DAP0.812410.298
52DAP/51DAP1.03560.888
53DAP/52DAP1.068760.91
55DAP/53DAP1.211720.534
57DAP/55DAP1.053350.915
62DAP/57DAP1.186920.257
68DAP/62DAP1.306390.151
68DAP/14DAP1.587260.223

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.462470.018

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.820880.343
Mature Green Tomato/Ripe Tomato2.102810.237
Immature Eggplant/Mature Eggplant2.568590.05
Ripe Pepper/Ripe Tomato0.459770.293
Mature Eggplant/Ripe Tomato0.813161

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.941320.883
1-1-2/M820.971581
12-2/M821.050931
12-4/M820.95741
1-3/M820.943460.501
2-1-1/M820.982411
2-1/M821.095911
2-6/M821.138540.695
3-2/M821.00158
4-1-1/M820.902311
4-1/M820.823821
4-3-2/M821.032271
4-3/M821.0021
5-3/M820.948471
6-2/M821.084431
6-3/M821.002781
7-1/M821.053571
7-2/M821.049991
9-3-2/M820.82321

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.831190.247
IL2-6/WTpooled1.553440.531
IL7-5/WTpooled0.898511
IL7-3/WTpooled0.421280.298
IL12-4/WTpooled0.928980.71
IL1-4/WTpooled0.760650.415
WT/WTpooled1.069611

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.24850.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.024360.921
DC3000/delta hrp 6h1.299430.857
DC3000/delta hrp 12h1.082781
DC3000/delta hrp 24h1.107780.283

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.165210.073
DC3000 delta B/DC3000 delta AB1.13580.377

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.294541
Exp 36h1.331910.489
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980191
Var 0h1.085410.936
Var 12h I row2-row11.06570.613
Var 12h NI row2-row10.868380.713
Var 36h I row2-row10.860010.805
Var 36h NI row2-row11.936761
Var 60h I row2-row10.689510.439
Var 60h NI row2-row11.191320.904
Time course 0hI-0hNI0.974660.903
Time course 12hI-12hNI0.987320.956
Time course 36hI-36hNI0.998040.798
Time course 60hI-60hNI2.056520.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.15010.261
transgenic ySAMdc/azygous control (breaker)0.948280.49
transgenic ySAMdc/azygous control (red)0.847951

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.018610.495

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.880120.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.576230.172
Manapal/WT (break)0.757061
Manapal/WT (red)0.954360.607