Expression of 1-1-8.2.8.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00932 | 0.839 |
27DAP/17DAP | 1.21443 | 0.849 |
39DAP/27DAP | 0.91245 | 0.573 |
41DAP/39DAP | 1.64784 | 0.227 |
42DAP/41DAP | 0.90048 | 1 |
43DAP/42DAP | 1.08648 | 1 |
47DAP/43DAP | 0.86911 | 0.58 |
52DAP/47DAP | 0.92456 | 0.765 |
57DAP/52DAP | 1.00301 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97846 | 0.562 |
17DAP/reference | 0.95675 | |
27DAP/reference | 0.96002 | 0.369 |
39DAP/reference | 1.00676 | |
41DAP/reference | 0.87635 | 0.114 |
42DAP/reference | 0.92132 | 0.028 |
43DAP/reference | 0.9982 | 0.924 |
47DAP/reference | 0.9987 | 0.72 |
52DAP/reference | 0.87186 | 0.065 |
57DAP/reference | 0.92647 | 0.324 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.67366 | 0.046 |
27DAP/17DAP | 0.86952 | 0.58 |
39DAP/27DAP | 1.32451 | 0.069 |
41DAP/39DAP | 0.86436 | 0.117 |
42DAP/41DAP | 1.15405 | 0.234 |
43DAP/42DAP | 1.16108 | 0.212 |
47DAP/43DAP | 0.94751 | 0.743 |
52DAP/47DAP | 1.23391 | 0.46 |
57DAP/52DAP | 0.91507 | 0.558 |
57DAP/7DAP | 0.67592 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42007 | 0.576 |
17DAP/reference | 1.52495 | 0.18 |
27DAP/reference | 0.91011 | 0.303 |
39DAP/reference | 1.08949 | 0.96 |
41DAP/reference | 1.04633 | 0.791 |
42DAP/reference | 1.1979 | 0.686 |
43DAP/reference | 1.26702 | 0.408 |
47DAP/reference | 1.01023 | 1 |
52DAP/reference | 0.97566 | 0.477 |
57DAP/reference | 1.32664 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00937 | 0.894 |
17DAP/reference | 1.01175 | 0.874 |
27DAP/reference | 0.95758 | 0.34 |
39DAP/reference | 0.99647 | 0.661 |
41DAP/reference | 1.02463 | 1 |
42DAP/reference | 0.93474 | 0.321 |
43DAP/reference | 0.94825 | 0.285 |
47DAP/reference | 0.90195 | 0.027 |
52DAP/reference | 1.00339 | 1 |
57DAP/reference | 1.02332 | 0.908 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98702 | |
17DAP/reference | 1.01112 | 0.988 |
27DAP/reference | 1.17993 | 0.531 |
39DAP/reference | 1.02599 | 0.33 |
41DAP/reference | 0.92312 | 0.56 |
42DAP/reference | 1.08369 | 0.701 |
43DAP/reference | 0.77862 | 0.116 |
47DAP/reference | 1.05536 | 0.265 |
52DAP/reference | 1.10451 | 0.393 |
57DAP/reference | 0.79513 | 0.07 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99455 | 1 |
26DAP/20DAP | 0.87935 | 0.512 |
34DAP/26DAP | 1.15651 | 0.542 |
51DAP/34DAP | 0.81241 | 0.298 |
52DAP/51DAP | 1.0356 | 0.888 |
53DAP/52DAP | 1.06876 | 0.91 |
55DAP/53DAP | 1.21172 | 0.534 |
57DAP/55DAP | 1.05335 | 0.915 |
62DAP/57DAP | 1.18692 | 0.257 |
68DAP/62DAP | 1.30639 | 0.151 |
68DAP/14DAP | 1.58726 | 0.223 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.46247 | 0.018 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.82088 | 0.343 |
Mature Green Tomato/Ripe Tomato | 2.10281 | 0.237 |
Immature Eggplant/Mature Eggplant | 2.56859 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.45977 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.81316 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94132 | 0.883 |
1-1-2/M82 | 0.97158 | 1 |
12-2/M82 | 1.05093 | 1 |
12-4/M82 | 0.9574 | 1 |
1-3/M82 | 0.94346 | 0.501 |
2-1-1/M82 | 0.98241 | 1 |
2-1/M82 | 1.09591 | 1 |
2-6/M82 | 1.13854 | 0.695 |
3-2/M82 | 1.00158 | |
4-1-1/M82 | 0.90231 | 1 |
4-1/M82 | 0.82382 | 1 |
4-3-2/M82 | 1.03227 | 1 |
4-3/M82 | 1.002 | 1 |
5-3/M82 | 0.94847 | 1 |
6-2/M82 | 1.08443 | 1 |
6-3/M82 | 1.00278 | 1 |
7-1/M82 | 1.05357 | 1 |
7-2/M82 | 1.04999 | 1 |
9-3-2/M82 | 0.82321 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83119 | 0.247 |
IL2-6/WTpooled | 1.55344 | 0.531 |
IL7-5/WTpooled | 0.89851 | 1 |
IL7-3/WTpooled | 0.42128 | 0.298 |
IL12-4/WTpooled | 0.92898 | 0.71 |
IL1-4/WTpooled | 0.76065 | 0.415 |
WT/WTpooled | 1.06961 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.2485 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02436 | 0.921 |
DC3000/delta hrp 6h | 1.29943 | 0.857 |
DC3000/delta hrp 12h | 1.08278 | 1 |
DC3000/delta hrp 24h | 1.10778 | 0.283 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16521 | 0.073 |
DC3000 delta B/DC3000 delta AB | 1.1358 | 0.377 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.29454 | 1 |
Exp 36h | 1.33191 | 0.489 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98019 | 1 |
Var 0h | 1.08541 | 0.936 |
Var 12h I row2-row1 | 1.0657 | 0.613 |
Var 12h NI row2-row1 | 0.86838 | 0.713 |
Var 36h I row2-row1 | 0.86001 | 0.805 |
Var 36h NI row2-row1 | 1.93676 | 1 |
Var 60h I row2-row1 | 0.68951 | 0.439 |
Var 60h NI row2-row1 | 1.19132 | 0.904 |
Time course 0hI-0hNI | 0.97466 | 0.903 |
Time course 12hI-12hNI | 0.98732 | 0.956 |
Time course 36hI-36hNI | 0.99804 | 0.798 |
Time course 60hI-60hNI | 2.05652 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.1501 | 0.261 |
transgenic ySAMdc/azygous control (breaker) | 0.94828 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.84795 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01861 | 0.495 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.88012 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.57623 | 0.172 |
Manapal/WT (break) | 0.75706 | 1 |
Manapal/WT (red) | 0.95436 | 0.607 |
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