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Expression of 1-1-8.3.1.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.120060.561
27DAP/17DAP1.05750.877
39DAP/27DAP0.980710.749
41DAP/39DAP1.008751
42DAP/41DAP0.936951
43DAP/42DAP1.021071
47DAP/43DAP1.054670.926
52DAP/47DAP0.978210.908
57DAP/52DAP1.061140.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.270380.04
17DAP/reference1.290330.049
27DAP/reference1.22110.091
39DAP/reference1.117540.318
41DAP/reference1.509580.036
42DAP/reference1.451070.001
43DAP/reference1.257010.133
47DAP/reference1.199950.005
52DAP/reference1.206310.371
57DAP/reference0.915340.165

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.958530.526
27DAP/17DAP1.05542N/A
39DAP/27DAP1.06513N/A
41DAP/39DAP0.99341
42DAP/41DAP0.966240.734
43DAP/42DAP1.006490.83
47DAP/43DAP0.96860.87
52DAP/47DAP1.006071
57DAP/52DAP0.990160.828
57DAP/7DAP1.011061

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.011031
17DAP/reference1.084190.328
27DAP/reference0.997170.748
39DAP/reference1.007090.909
41DAP/reference0.99740.778
42DAP/reference1.052520.03
43DAP/reference0.999730.727
47DAP/reference1.184420.205
52DAP/reference0.938650.332
57DAP/reference0.99140.589

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.371170.049
17DAP/reference1.802680.007
27DAP/reference1.427070.02
39DAP/reference1.280970.018
41DAP/reference1.480960.008
42DAP/reference1.320030.057
43DAP/reference1.631750.111
47DAP/reference1.310080.008
52DAP/reference1.751180.006
57DAP/reference1.849540.01

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.021990.918
17DAP/reference1.118450.551
27DAP/reference0.940720.195
39DAP/reference1.113520.437
41DAP/reference0.95160.033
42DAP/reference1.087250.701
43DAP/reference1.063470.84
47DAP/reference1.322280.077
52DAP/reference0.953940.637
57DAP/reference0.73490.022

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.972121
26DAP/20DAP1.018531
34DAP/26DAP0.979160.97
51DAP/34DAP1.011010.898
52DAP/51DAP1.000611
53DAP/52DAP1.019430.944
55DAP/53DAP0.92286N/A
57DAP/55DAP1.034380.975
62DAP/57DAP1.084611
68DAP/62DAP0.604410.579
68DAP/14DAP0.898821

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.127640.246

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.970530.66
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.5735N/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.235150.551
1-1-2/M820.97581
12-2/M820.883290.721
12-4/M821.040221
1-3/M821.056770.479
2-1-1/M821.110820.764
2-1/M82N/AN/A
2-6/M820.976981
3-2/M820.976681
4-1-1/M821.054531
4-1/M821.115471
4-3-2/M821.05265N/A
4-3/M820.957890.72
5-3/M821.023371
6-2/M821.032651
6-3/M820.986281
7-1/M821.044380.598
7-2/M821.035941
9-3-2/M820.819210.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.33350.277
IL2-6/WTpooled0.886321
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.00961
IL12-4/WTpooled0.728710.52
IL1-4/WTpooled1.190121
WT/WTpooled1.046131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.70951N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.113790.894
DC3000/delta hrp 6h0.756570.95
DC3000/delta hrp 12h1.031161
DC3000/delta hrp 24h0.980560.924

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.213190.042
DC3000 delta B/DC3000 delta AB1.150920.23

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.028291
Exp 36h0.508670.313
Exp 60h1.136361

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.975141
Var 0h0.937321
Var 12h I row2-row11.185950.254
Var 12h NI row2-row10.911960.82
Var 36h I row2-row10.78920.805
Var 36h NI row2-row11.04821
Var 60h I row2-row11.164341
Var 60h NI row2-row11.075771
Time course 0hI-0hNI1.054031
Time course 12hI-12hNI0.967860.769
Time course 36hI-36hNI0.961150.433
Time course 60hI-60hNI1.247160.069

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.954830.662
transgenic ySAMdc/azygous control (breaker)1.108851
transgenic ySAMdc/azygous control (red)0.877621

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.955370.168

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.279690.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.076220.307
Manapal/WT (break)1.020491
Manapal/WT (red)1.016611