Expression of 1-1-8.3.1.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.40684 | 0.13 |
27DAP/17DAP | 1.19224 | 0.822 |
39DAP/27DAP | 0.76685 | 0.522 |
41DAP/39DAP | 1.11187 | 0.708 |
42DAP/41DAP | 1.20183 | 0.886 |
43DAP/42DAP | 0.80464 | 0.589 |
47DAP/43DAP | 1.84859 | 0.229 |
52DAP/47DAP | 1.07928 | 0.854 |
57DAP/52DAP | 1.37294 | 0.878 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.954 | 0.442 |
17DAP/reference | 0.94712 | 0.419 |
27DAP/reference | 1.07203 | 0.239 |
39DAP/reference | 0.91405 | 0.333 |
41DAP/reference | 0.92053 | 0.341 |
42DAP/reference | 1.00776 | 1 |
43DAP/reference | 1.06168 | 0.547 |
47DAP/reference | 1.2071 | 0.014 |
52DAP/reference | 1.1734 | 0.024 |
57DAP/reference | 1.03821 | 0.783 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11895 | 0.619 |
27DAP/17DAP | 1.02662 | 0.98 |
39DAP/27DAP | 1.25238 | 0.231 |
41DAP/39DAP | 0.80963 | 0.087 |
42DAP/41DAP | 1.17383 | 0.663 |
43DAP/42DAP | 1.228 | 0.162 |
47DAP/43DAP | 1.00174 | 1 |
52DAP/47DAP | 0.91068 | 0.753 |
57DAP/52DAP | 0.82391 | 0.16 |
57DAP/7DAP | 1.17234 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05576 | 0.857 |
17DAP/reference | 1.07219 | 0.693 |
27DAP/reference | 1.07609 | 0.804 |
39DAP/reference | 1.29834 | 0.024 |
41DAP/reference | 1.24117 | 0.165 |
42DAP/reference | 1.34207 | 0.016 |
43DAP/reference | 1.10491 | 0.569 |
47DAP/reference | 1.09686 | 0.468 |
52DAP/reference | 1.13153 | 0.599 |
57DAP/reference | 1.04846 | 0.851 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94231 | 0.386 |
17DAP/reference | 1.15602 | 0.12 |
27DAP/reference | 1.32742 | 0.017 |
39DAP/reference | 1.59658 | 0.013 |
41DAP/reference | 1.10317 | 0.688 |
42DAP/reference | 1.15794 | 0.359 |
43DAP/reference | 1.32508 | 0.247 |
47DAP/reference | 1.14593 | 0.153 |
52DAP/reference | 1.44292 | 0.667 |
57DAP/reference | 1.19262 | 0.449 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89438 | 0.169 |
17DAP/reference | 1.07418 | 0.792 |
27DAP/reference | 0.93611 | |
39DAP/reference | 1.18859 | 0.39 |
41DAP/reference | 1.09703 | 0.818 |
42DAP/reference | 1.45155 | 0.076 |
43DAP/reference | 1.42538 | 0.026 |
47DAP/reference | 1.28235 | 0.007 |
52DAP/reference | 1.40637 | 0.301 |
57DAP/reference | 1.73435 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00961 | 1 |
26DAP/20DAP | 0.82731 | 0.512 |
34DAP/26DAP | 0.84159 | 0.741 |
51DAP/34DAP | 1.40601 | 0.137 |
52DAP/51DAP | 1.39991 | 0.349 |
53DAP/52DAP | 1.55684 | 0.806 |
55DAP/53DAP | 0.66839 | 0.663 |
57DAP/55DAP | 0.86571 | 0.633 |
62DAP/57DAP | 1.01451 | 1 |
68DAP/62DAP | 1.15048 | 0.845 |
68DAP/14DAP | 1.49122 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.90311 | 0.14 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.65089 | 0.06 |
Immature Eggplant/Mature Eggplant | 1.44994 | 0.056 |
Ripe Pepper/Ripe Tomato | 0.25792 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.25906 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.68833 | 0.877 |
1-1-2/M82 | 0.9997 | 1 |
12-2/M82 | 0.94452 | 0.955 |
12-4/M82 | 0.83549 | 0.358 |
1-3/M82 | 1.3702 | |
2-1-1/M82 | 1.15133 | 0.439 |
2-1/M82 | 1.44637 | 0.345 |
2-6/M82 | 0.79318 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.92436 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.64193 | |
4-3/M82 | 0.69403 | 1 |
5-3/M82 | 1.18607 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.88958 | 1 |
7-1/M82 | 1.10735 | |
7-2/M82 | 0.73054 | |
9-3-2/M82 | 0.70141 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.82835 | 0.321 |
IL2-6/WTpooled | 1.24847 | 0.788 |
IL7-5/WTpooled | 1.179 | 0.792 |
IL7-3/WTpooled | 1.07695 | 1 |
IL12-4/WTpooled | 1.00401 | 1 |
IL1-4/WTpooled | 1.1137 | 0.426 |
WT/WTpooled | 1.01541 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11119 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04243 | 1 |
DC3000/delta hrp 6h | 1.01512 | |
DC3000/delta hrp 12h | 0.95967 | 1 |
DC3000/delta hrp 24h | 0.89401 | 0.257 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06075 | 1 |
Exp 36h | 0.66707 | 0.41 |
Exp 60h | 0.90761 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95543 | 1 |
Var 0h | 1.21278 | 0.936 |
Var 12h I row2-row1 | 1.11448 | 0.473 |
Var 12h NI row2-row1 | 0.84414 | |
Var 36h I row2-row1 | 0.96451 | 1 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | 0.82422 | |
Var 60h NI row2-row1 | 1.08567 | 0.904 |
Time course 0hI-0hNI | 1.03201 | 1 |
Time course 12hI-12hNI | 0.96755 | 0.725 |
Time course 36hI-36hNI | 0.89983 | 0.194 |
Time course 60hI-60hNI | 0.73948 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01001 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 0.99334 | 1 |
transgenic ySAMdc/azygous control (red) | 0.929 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03788 | 0.35 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.57682 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86359 | 1 |
Manapal/WT (break) | 0.96931 | 1 |
Manapal/WT (red) | 1.08445 | 1 |
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