Expression of 1-1-8.3.1.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.406840.13
27DAP/17DAP1.192240.822
39DAP/27DAP0.766850.522
41DAP/39DAP1.111870.708
42DAP/41DAP1.201830.886
43DAP/42DAP0.804640.589
47DAP/43DAP1.848590.229
52DAP/47DAP1.079280.854
57DAP/52DAP1.372940.878

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.9540.442
17DAP/reference0.947120.419
27DAP/reference1.072030.239
39DAP/reference0.914050.333
41DAP/reference0.920530.341
42DAP/reference1.007761
43DAP/reference1.061680.547
47DAP/reference1.20710.014
52DAP/reference1.17340.024
57DAP/reference1.038210.783

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.118950.619
27DAP/17DAP1.026620.98
39DAP/27DAP1.252380.231
41DAP/39DAP0.809630.087
42DAP/41DAP1.173830.663
43DAP/42DAP1.2280.162
47DAP/43DAP1.001741
52DAP/47DAP0.910680.753
57DAP/52DAP0.823910.16
57DAP/7DAP1.172341

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.055760.857
17DAP/reference1.072190.693
27DAP/reference1.076090.804
39DAP/reference1.298340.024
41DAP/reference1.241170.165
42DAP/reference1.342070.016
43DAP/reference1.104910.569
47DAP/reference1.096860.468
52DAP/reference1.131530.599
57DAP/reference1.048460.851

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.942310.386
17DAP/reference1.156020.12
27DAP/reference1.327420.017
39DAP/reference1.596580.013
41DAP/reference1.103170.688
42DAP/reference1.157940.359
43DAP/reference1.325080.247
47DAP/reference1.145930.153
52DAP/reference1.442920.667
57DAP/reference1.192620.449

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.894380.169
17DAP/reference1.074180.792
27DAP/reference0.93611
39DAP/reference1.188590.39
41DAP/reference1.097030.818
42DAP/reference1.451550.076
43DAP/reference1.425380.026
47DAP/reference1.282350.007
52DAP/reference1.406370.301
57DAP/reference1.734350.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.009611
26DAP/20DAP0.827310.512
34DAP/26DAP0.841590.741
51DAP/34DAP1.406010.137
52DAP/51DAP1.399910.349
53DAP/52DAP1.556840.806
55DAP/53DAP0.668390.663
57DAP/55DAP0.865710.633
62DAP/57DAP1.014511
68DAP/62DAP1.150480.845
68DAP/14DAP1.491220.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.903110.14

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.650890.06
Immature Eggplant/Mature Eggplant1.449940.056
Ripe Pepper/Ripe Tomato0.257920.293
Mature Eggplant/Ripe Tomato0.259060.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.688330.877
1-1-2/M820.99971
12-2/M820.944520.955
12-4/M820.835490.358
1-3/M821.3702
2-1-1/M821.151330.439
2-1/M821.446370.345
2-6/M820.79318
3-2/M82N/AN/A
4-1-1/M820.924361
4-1/M82N/AN/A
4-3-2/M820.64193
4-3/M820.694031
5-3/M821.186071
6-2/M82N/AN/A
6-3/M820.889581
7-1/M821.10735
7-2/M820.73054
9-3-2/M820.70141

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.828350.321
IL2-6/WTpooled1.248470.788
IL7-5/WTpooled1.1790.792
IL7-3/WTpooled1.076951
IL12-4/WTpooled1.004011
IL1-4/WTpooled1.11370.426
WT/WTpooled1.015411

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.111191

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.042431
DC3000/delta hrp 6h1.01512
DC3000/delta hrp 12h0.959671
DC3000/delta hrp 24h0.894010.257

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.060751
Exp 36h0.667070.41
Exp 60h0.907610.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.955431
Var 0h1.212780.936
Var 12h I row2-row11.114480.473
Var 12h NI row2-row10.84414
Var 36h I row2-row10.964511
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row10.82422
Var 60h NI row2-row11.085670.904
Time course 0hI-0hNI1.032011
Time course 12hI-12hNI0.967550.725
Time course 36hI-36hNI0.899830.194
Time course 60hI-60hNI0.739480.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.010010.863
transgenic ySAMdc/azygous control (breaker)0.993341
transgenic ySAMdc/azygous control (red)0.9291

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.037880.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.576820.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.863591
Manapal/WT (break)0.969311
Manapal/WT (red)1.084451