Expression of 1-1-8.3.1.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.969430.722
27DAP/17DAP0.992220.902
39DAP/27DAP1.010170.857
41DAP/39DAP0.833150.445
42DAP/41DAP1.054461
43DAP/42DAP1.204190.867
47DAP/43DAP0.997510.953
52DAP/47DAP1.04670.964
57DAP/52DAP1.298770.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.157530.218
17DAP/reference0.939420.448
27DAP/reference0.926260.457
39DAP/reference0.875690.043
41DAP/reference0.846140.154
42DAP/reference0.975170.398
43DAP/reference0.920380.331
47DAP/reference1.106190.329
52DAP/reference1.276550.056
57DAP/reference1.221360.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.152310.515
27DAP/17DAP1.091370.924
39DAP/27DAP0.829790.152
41DAP/39DAP1.270840.65
42DAP/41DAP0.857440.312
43DAP/42DAP1.173410.061
47DAP/43DAP0.910310.428
52DAP/47DAP0.968630.886
57DAP/52DAP1.542720.071
57DAP/7DAP1.276031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.435420.05
17DAP/reference1.076390.822
27DAP/reference0.953020.402
39DAP/reference0.855650.056
41DAP/reference0.948080.357
42DAP/reference0.797620.06
43DAP/reference0.989540.58
47DAP/reference0.861240.079
52DAP/reference0.84080.09
57DAP/reference1.016970.748

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.291210.249
17DAP/reference1.044890.904
27DAP/reference1.068941
39DAP/reference1.18740.316
41DAP/reference1.239470.471
42DAP/reference0.912680.261
43DAP/reference0.880730.243
47DAP/reference0.8850.141
52DAP/reference1.096790.471
57DAP/reference1.049521

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.040750.903
17DAP/reference1.0221
27DAP/reference1.013430.777
39DAP/reference0.886940.199
41DAP/reference1.031011
42DAP/reference1.201830.3
43DAP/reference1.152750.465
47DAP/reference0.89780.231
52DAP/reference1.101390.8
57DAP/reference1.287780.214

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.274430.966
26DAP/20DAP1.296280.481
34DAP/26DAP1.357060.819
51DAP/34DAP0.962980.737
52DAP/51DAP1.791910.038
53DAP/52DAP0.848210.417
55DAP/53DAP1.600660.022
57DAP/55DAP0.789320.344
62DAP/57DAP1.363670.029
68DAP/62DAP1.375510.491
68DAP/14DAP1.139770.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.684340.027

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.090240.948
Immature Eggplant/Mature Eggplant1.55074
Ripe Pepper/Ripe Tomato0.65238
Mature Eggplant/Ripe Tomato0.574161

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.016141
1-1-2/M821.069561
12-2/M820.79362
12-4/M820.86466
1-3/M821.19532
2-1-1/M821.55820.689
2-1/M821.07011
2-6/M820.888811
3-2/M821.27349
4-1-1/M821.138181
4-1/M82N/AN/A
4-3-2/M820.82841
4-3/M820.888341
5-3/M821.331680.455
6-2/M820.90183
6-3/M821.05461
7-1/M821.20453
7-2/M820.913470.57
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.111141
IL12-4/WTpooled1.080550.785
IL1-4/WTpooled1.08055
WT/WTpooled0.858111

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.914740.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.976071
DC3000/delta hrp 6h1.265791
DC3000/delta hrp 12h1.390111
DC3000/delta hrp 24h1.395180.165

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.225610.049
DC3000 delta B/DC3000 delta AB1.156050.341

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.111791
Exp 36h1.246220.693
Exp 60h1.062671

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.014191
Var 0h1.0071
Var 12h I row2-row10.763920.418
Var 12h NI row2-row10.922380.906
Var 36h I row2-row10.850771
Var 36h NI row2-row11.908691
Var 60h I row2-row11.0270.562
Var 60h NI row2-row10.937510.977
Time course 0hI-0hNI0.948910.609
Time course 12hI-12hNI0.908090.224
Time course 36hI-36hNI0.95130.344
Time course 60hI-60hNI0.608310.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.147250.256
transgenic ySAMdc/azygous control (breaker)0.854990.139
transgenic ySAMdc/azygous control (red)0.985531

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.940780.431

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.526790.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.363460.088
Manapal/WT (break)1.49640.381
Manapal/WT (red)1.058131