Expression of 1-1-8.3.1.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96943 | 0.722 |
27DAP/17DAP | 0.99222 | 0.902 |
39DAP/27DAP | 1.01017 | 0.857 |
41DAP/39DAP | 0.83315 | 0.445 |
42DAP/41DAP | 1.05446 | 1 |
43DAP/42DAP | 1.20419 | 0.867 |
47DAP/43DAP | 0.99751 | 0.953 |
52DAP/47DAP | 1.0467 | 0.964 |
57DAP/52DAP | 1.29877 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15753 | 0.218 |
17DAP/reference | 0.93942 | 0.448 |
27DAP/reference | 0.92626 | 0.457 |
39DAP/reference | 0.87569 | 0.043 |
41DAP/reference | 0.84614 | 0.154 |
42DAP/reference | 0.97517 | 0.398 |
43DAP/reference | 0.92038 | 0.331 |
47DAP/reference | 1.10619 | 0.329 |
52DAP/reference | 1.27655 | 0.056 |
57DAP/reference | 1.22136 | 0.014 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15231 | 0.515 |
27DAP/17DAP | 1.09137 | 0.924 |
39DAP/27DAP | 0.82979 | 0.152 |
41DAP/39DAP | 1.27084 | 0.65 |
42DAP/41DAP | 0.85744 | 0.312 |
43DAP/42DAP | 1.17341 | 0.061 |
47DAP/43DAP | 0.91031 | 0.428 |
52DAP/47DAP | 0.96863 | 0.886 |
57DAP/52DAP | 1.54272 | 0.071 |
57DAP/7DAP | 1.27603 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43542 | 0.05 |
17DAP/reference | 1.07639 | 0.822 |
27DAP/reference | 0.95302 | 0.402 |
39DAP/reference | 0.85565 | 0.056 |
41DAP/reference | 0.94808 | 0.357 |
42DAP/reference | 0.79762 | 0.06 |
43DAP/reference | 0.98954 | 0.58 |
47DAP/reference | 0.86124 | 0.079 |
52DAP/reference | 0.8408 | 0.09 |
57DAP/reference | 1.01697 | 0.748 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29121 | 0.249 |
17DAP/reference | 1.04489 | 0.904 |
27DAP/reference | 1.06894 | 1 |
39DAP/reference | 1.1874 | 0.316 |
41DAP/reference | 1.23947 | 0.471 |
42DAP/reference | 0.91268 | 0.261 |
43DAP/reference | 0.88073 | 0.243 |
47DAP/reference | 0.885 | 0.141 |
52DAP/reference | 1.09679 | 0.471 |
57DAP/reference | 1.04952 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04075 | 0.903 |
17DAP/reference | 1.022 | 1 |
27DAP/reference | 1.01343 | 0.777 |
39DAP/reference | 0.88694 | 0.199 |
41DAP/reference | 1.03101 | 1 |
42DAP/reference | 1.20183 | 0.3 |
43DAP/reference | 1.15275 | 0.465 |
47DAP/reference | 0.8978 | 0.231 |
52DAP/reference | 1.10139 | 0.8 |
57DAP/reference | 1.28778 | 0.214 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.27443 | 0.966 |
26DAP/20DAP | 1.29628 | 0.481 |
34DAP/26DAP | 1.35706 | 0.819 |
51DAP/34DAP | 0.96298 | 0.737 |
52DAP/51DAP | 1.79191 | 0.038 |
53DAP/52DAP | 0.84821 | 0.417 |
55DAP/53DAP | 1.60066 | 0.022 |
57DAP/55DAP | 0.78932 | 0.344 |
62DAP/57DAP | 1.36367 | 0.029 |
68DAP/62DAP | 1.37551 | 0.491 |
68DAP/14DAP | 1.13977 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.68434 | 0.027 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.09024 | 0.948 |
Immature Eggplant/Mature Eggplant | 1.55074 | |
Ripe Pepper/Ripe Tomato | 0.65238 | |
Mature Eggplant/Ripe Tomato | 0.57416 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01614 | 1 |
1-1-2/M82 | 1.06956 | 1 |
12-2/M82 | 0.79362 | |
12-4/M82 | 0.86466 | |
1-3/M82 | 1.19532 | |
2-1-1/M82 | 1.5582 | 0.689 |
2-1/M82 | 1.07011 | |
2-6/M82 | 0.88881 | 1 |
3-2/M82 | 1.27349 | |
4-1-1/M82 | 1.13818 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.82841 | |
4-3/M82 | 0.88834 | 1 |
5-3/M82 | 1.33168 | 0.455 |
6-2/M82 | 0.90183 | |
6-3/M82 | 1.0546 | 1 |
7-1/M82 | 1.20453 | |
7-2/M82 | 0.91347 | 0.57 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.11114 | 1 |
IL12-4/WTpooled | 1.08055 | 0.785 |
IL1-4/WTpooled | 1.08055 | |
WT/WTpooled | 0.85811 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91474 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97607 | 1 |
DC3000/delta hrp 6h | 1.26579 | 1 |
DC3000/delta hrp 12h | 1.39011 | 1 |
DC3000/delta hrp 24h | 1.39518 | 0.165 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.22561 | 0.049 |
DC3000 delta B/DC3000 delta AB | 1.15605 | 0.341 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.11179 | 1 |
Exp 36h | 1.24622 | 0.693 |
Exp 60h | 1.06267 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01419 | 1 |
Var 0h | 1.007 | 1 |
Var 12h I row2-row1 | 0.76392 | 0.418 |
Var 12h NI row2-row1 | 0.92238 | 0.906 |
Var 36h I row2-row1 | 0.85077 | 1 |
Var 36h NI row2-row1 | 1.90869 | 1 |
Var 60h I row2-row1 | 1.027 | 0.562 |
Var 60h NI row2-row1 | 0.93751 | 0.977 |
Time course 0hI-0hNI | 0.94891 | 0.609 |
Time course 12hI-12hNI | 0.90809 | 0.224 |
Time course 36hI-36hNI | 0.9513 | 0.344 |
Time course 60hI-60hNI | 0.60831 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.14725 | 0.256 |
transgenic ySAMdc/azygous control (breaker) | 0.85499 | 0.139 |
transgenic ySAMdc/azygous control (red) | 0.98553 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94078 | 0.431 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.52679 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.36346 | 0.088 |
Manapal/WT (break) | 1.4964 | 0.381 |
Manapal/WT (red) | 1.05813 | 1 |
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