Expression of 1-1-8.3.11.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.877470.464
27DAP/17DAP0.879790.753
39DAP/27DAP0.810560.482
41DAP/39DAP1.07580.914
42DAP/41DAP1.38290.938
43DAP/42DAP1.031491
47DAP/43DAP1.601540.943
52DAP/47DAP1.997560.294
57DAP/52DAP1.24850.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.925210.293
17DAP/reference1.05730.384
27DAP/reference1.089150.098
39DAP/reference1.056730.218
41DAP/reference0.948390.542
42DAP/reference0.842670.013
43DAP/reference0.95350.538
47DAP/reference0.976540.322
52DAP/reference0.708670.025
57DAP/reference0.883350.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.149890.536
27DAP/17DAP0.822790.748
39DAP/27DAP0.947750.732
41DAP/39DAP0.774260.53
42DAP/41DAP1.139640.615
43DAP/42DAP0.945840.447
47DAP/43DAP0.822980.059
52DAP/47DAP1.375720.268
57DAP/52DAP1.193420.726
57DAP/7DAP0.879141

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.005251
17DAP/reference1.369260.011
27DAP/reference1.314090.088
39DAP/reference1.219340.09
41DAP/reference1.2210.199
42DAP/reference1.218960.132
43DAP/reference1.209530.148
47DAP/reference0.932930.504
52DAP/reference1.228970.058
57DAP/reference1.025911

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.918710.134
17DAP/reference0.969610.139
27DAP/reference0.796220.071
39DAP/reference0.856920.183
41DAP/reference0.809990.047
42DAP/reference0.903970.212
43DAP/reference0.910660.292
47DAP/reference1.008591
52DAP/reference0.933660.239
57DAP/reference1.00060.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.21920.185
17DAP/reference0.9660.601
27DAP/reference1.274370.111
39DAP/reference1.227790.067
41DAP/reference1.092180.588
42DAP/reference1.081650.836
43DAP/reference0.938260.468
47DAP/reference0.958720.396
52DAP/reference1.343270.146
57DAP/reference0.75870.083

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.025420.966
26DAP/20DAP1.020691
34DAP/26DAP1.989310.819
51DAP/34DAP1.111440.759
52DAP/51DAP1.492980.367
53DAP/52DAP0.9293
55DAP/53DAP1.689450.312
57DAP/55DAP0.790210.202
62DAP/57DAP1.177240.723
68DAP/62DAP1.268920.869
68DAP/14DAP0.966261

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.592730.043

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.798840.351
Mature Green Tomato/Ripe Tomato0.477970.132
Immature Eggplant/Mature Eggplant1.430650.19
Ripe Pepper/Ripe Tomato1.337521
Mature Eggplant/Ripe Tomato1.133831

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.972810.944
1-1-2/M820.983361
12-2/M821.137681
12-4/M821.50543
1-3/M820.78555
2-1-1/M821.155351
2-1/M821.20189
2-6/M821.16040.594
3-2/M820.85186
4-1-1/M820.969550.847
4-1/M821.14619
4-3-2/M820.90637
4-3/M820.790561
5-3/M820.976161
6-2/M821.100791
6-3/M820.969811
7-1/M820.9642
7-2/M820.879960.469
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.07289
IL2-6/WTpooled1.115150.395
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.161541
IL12-4/WTpooled0.865340.71
IL1-4/WTpooled1.00604
WT/WTpooled1.030321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.00017

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.96131
DC3000/delta hrp 6h1.666230.857
DC3000/delta hrp 12h0.891751
DC3000/delta hrp 24h1.067930.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.801780.134
DC3000 delta B/DC3000 delta AB1.480730.13

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.114351
Exp 36h0.952480.879
Exp 60h0.919380.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.976671
Var 0h0.951181
Var 12h I row2-row10.981170.948
Var 12h NI row2-row11.001141
Var 36h I row2-row11.49210.339
Var 36h NI row2-row11.103641
Var 60h I row2-row10.959960.439
Var 60h NI row2-row11.17620.701
Time course 0hI-0hNI0.886950.272
Time course 12hI-12hNI1.087690.72
Time course 36hI-36hNI0.928550.306
Time course 60hI-60hNI0.871470.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.97540.722
transgenic ySAMdc/azygous control (breaker)1.198031
transgenic ySAMdc/azygous control (red)1.080980.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.975330.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.248620.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.031221
Manapal/WT (break)0.937151
Manapal/WT (red)0.915490.242