Expression of 1-1-8.3.12.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.62985 | 0.107 |
27DAP/17DAP | 1.00282 | 1 |
39DAP/27DAP | 1.49374 | 0.212 |
41DAP/39DAP | 0.90212 | 0.59 |
42DAP/41DAP | 0.95537 | 1 |
43DAP/42DAP | 0.82932 | 0.639 |
47DAP/43DAP | 0.79171 | 0.366 |
52DAP/47DAP | 0.86865 | 0.623 |
57DAP/52DAP | 1.57323 | 0.826 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.47051 | 0.008 |
17DAP/reference | 1.04812 | 0.653 |
27DAP/reference | 0.95523 | 0.538 |
39DAP/reference | 0.8833 | 0.039 |
41DAP/reference | 1.03586 | 0.963 |
42DAP/reference | 1.21999 | 0.084 |
43DAP/reference | 0.81867 | 0.023 |
47DAP/reference | 0.88143 | 0.09 |
52DAP/reference | 1.14421 | 0.022 |
57DAP/reference | 0.86419 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.6293 | 0.042 |
27DAP/17DAP | 1.03517 | 0.909 |
39DAP/27DAP | 0.82585 | 0.159 |
41DAP/39DAP | 1.25771 | 0.258 |
42DAP/41DAP | 0.98166 | 0.784 |
43DAP/42DAP | 0.7412 | 0.027 |
47DAP/43DAP | 1.11445 | 0.601 |
52DAP/47DAP | 0.74498 | 0.18 |
57DAP/52DAP | 0.78296 | 0.29 |
57DAP/7DAP | 0.51684 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50562 | 0.059 |
17DAP/reference | 0.87315 | 0.072 |
27DAP/reference | 1.11257 | 0.301 |
39DAP/reference | 0.89265 | 0.095 |
41DAP/reference | 0.97848 | 0.489 |
42DAP/reference | 1.04617 | 0.889 |
43DAP/reference | 0.85088 | 0.056 |
47DAP/reference | 1.10644 | 0.618 |
52DAP/reference | 0.85199 | 0.028 |
57DAP/reference | 0.85265 | 0.101 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15341 | 0.993 |
17DAP/reference | 1.68363 | 0.229 |
27DAP/reference | 1.7219 | 0.03 |
39DAP/reference | 1.4582 | 0.119 |
41DAP/reference | 1.213 | 0.074 |
42DAP/reference | 1.34618 | 0.086 |
43DAP/reference | 1.35147 | 0.097 |
47DAP/reference | 1.18285 | 0.021 |
52DAP/reference | 1.26961 | 0.098 |
57DAP/reference | 0.84878 | 0.361 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.7473 | 0.018 |
17DAP/reference | 1.12202 | 0.595 |
27DAP/reference | 0.95316 | 0.442 |
39DAP/reference | 0.87051 | 0.101 |
41DAP/reference | 0.84657 | 0.055 |
42DAP/reference | 0.8476 | 0.134 |
43DAP/reference | 0.98625 | 0.523 |
47DAP/reference | 1.05488 | 0.76 |
52DAP/reference | 0.73828 | 0.114 |
57DAP/reference | 0.92473 | 0.394 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.72209 | |
26DAP/20DAP | 1.82891 | 0.099 |
34DAP/26DAP | 0.83416 | 0.329 |
51DAP/34DAP | 0.7981 | 0.136 |
52DAP/51DAP | 0.87027 | 1 |
53DAP/52DAP | 1.24779 | 0.413 |
55DAP/53DAP | 0.93782 | 0.592 |
57DAP/55DAP | 1.30747 | 0.71 |
62DAP/57DAP | 0.93906 | 0.871 |
68DAP/62DAP | 0.6479 | 0.245 |
68DAP/14DAP | 0.9731 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.18967 | 0.038 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.92289 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.70794 | 0.015 |
Immature Eggplant/Mature Eggplant | 2.6615 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.73559 | 1 |
Mature Eggplant/Ripe Tomato | 0.81992 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05832 | 0.877 |
1-1-2/M82 | 1.1001 | 0.972 |
12-2/M82 | 0.87813 | 0.862 |
12-4/M82 | 0.96419 | 1 |
1-3/M82 | 1.7294 | |
2-1-1/M82 | 1.05885 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.91886 | |
3-2/M82 | 0.70664 | |
4-1-1/M82 | 1.0916 | 1 |
4-1/M82 | 1.46725 | 1 |
4-3-2/M82 | 1.17504 | 0.508 |
4-3/M82 | 1.55919 | 1 |
5-3/M82 | 1.26947 | 0.467 |
6-2/M82 | 1.74323 | |
6-3/M82 | 0.85227 | 0.375 |
7-1/M82 | 1.30372 | 0.598 |
7-2/M82 | 1.17761 | 0.291 |
9-3-2/M82 | 1.46763 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.8318 | 0.358 |
IL7-5/WTpooled | 0.78602 | |
IL7-3/WTpooled | 0.7783 | 0.418 |
IL12-4/WTpooled | 0.96225 | 1 |
IL1-4/WTpooled | 0.91997 | 0.834 |
WT/WTpooled | 1.23106 | 0.874 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.22909 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04022 | 0.921 |
DC3000/delta hrp 6h | 0.7399 | 0.95 |
DC3000/delta hrp 12h | 1.09901 | 1 |
DC3000/delta hrp 24h | 2.85665 | 0.025 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21662 | 0.145 |
DC3000 delta B/DC3000 delta AB | 0.9663 | 0.745 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06685 | 1 |
Exp 36h | 1.65371 | 0.489 |
Exp 60h | 1.861 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.09957 | 1 |
Var 0h | 1.01439 | 1 |
Var 12h I row2-row1 | 1.1096 | 0.228 |
Var 12h NI row2-row1 | 1.01932 | 1 |
Var 36h I row2-row1 | 0.8193 | 1 |
Var 36h NI row2-row1 | 1.00332 | 1 |
Var 60h I row2-row1 | 0.70525 | 0.285 |
Var 60h NI row2-row1 | 0.94284 | 1 |
Time course 0hI-0hNI | 1.09592 | 0.799 |
Time course 12hI-12hNI | 1.26643 | 0.009 |
Time course 36hI-36hNI | 1.77431 | 0.005 |
Time course 60hI-60hNI | 4.19774 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10592 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 1.21364 | 0.161 |
transgenic ySAMdc/azygous control (red) | 0.83155 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92063 | 0.146 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.7638 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02097 | 1 |
Manapal/WT (break) | 1.46575 | 0.381 |
Manapal/WT (red) | 1.18682 | 1 |
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