Expression of 1-1-8.3.12.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.629850.107
27DAP/17DAP1.002821
39DAP/27DAP1.493740.212
41DAP/39DAP0.902120.59
42DAP/41DAP0.955371
43DAP/42DAP0.829320.639
47DAP/43DAP0.791710.366
52DAP/47DAP0.868650.623
57DAP/52DAP1.573230.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.470510.008
17DAP/reference1.048120.653
27DAP/reference0.955230.538
39DAP/reference0.88330.039
41DAP/reference1.035860.963
42DAP/reference1.219990.084
43DAP/reference0.818670.023
47DAP/reference0.881430.09
52DAP/reference1.144210.022
57DAP/reference0.864190.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.62930.042
27DAP/17DAP1.035170.909
39DAP/27DAP0.825850.159
41DAP/39DAP1.257710.258
42DAP/41DAP0.981660.784
43DAP/42DAP0.74120.027
47DAP/43DAP1.114450.601
52DAP/47DAP0.744980.18
57DAP/52DAP0.782960.29
57DAP/7DAP0.516841

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.505620.059
17DAP/reference0.873150.072
27DAP/reference1.112570.301
39DAP/reference0.892650.095
41DAP/reference0.978480.489
42DAP/reference1.046170.889
43DAP/reference0.850880.056
47DAP/reference1.106440.618
52DAP/reference0.851990.028
57DAP/reference0.852650.101

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.153410.993
17DAP/reference1.683630.229
27DAP/reference1.72190.03
39DAP/reference1.45820.119
41DAP/reference1.2130.074
42DAP/reference1.346180.086
43DAP/reference1.351470.097
47DAP/reference1.182850.021
52DAP/reference1.269610.098
57DAP/reference0.848780.361

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.74730.018
17DAP/reference1.122020.595
27DAP/reference0.953160.442
39DAP/reference0.870510.101
41DAP/reference0.846570.055
42DAP/reference0.84760.134
43DAP/reference0.986250.523
47DAP/reference1.054880.76
52DAP/reference0.738280.114
57DAP/reference0.924730.394

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.72209
26DAP/20DAP1.828910.099
34DAP/26DAP0.834160.329
51DAP/34DAP0.79810.136
52DAP/51DAP0.870271
53DAP/52DAP1.247790.413
55DAP/53DAP0.937820.592
57DAP/55DAP1.307470.71
62DAP/57DAP0.939060.871
68DAP/62DAP0.64790.245
68DAP/14DAP0.9731

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.189670.038

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.922890.058
Mature Green Tomato/Ripe Tomato1.707940.015
Immature Eggplant/Mature Eggplant2.66150.05
Ripe Pepper/Ripe Tomato0.735591
Mature Eggplant/Ripe Tomato0.819920.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.058320.877
1-1-2/M821.10010.972
12-2/M820.878130.862
12-4/M820.964191
1-3/M821.7294
2-1-1/M821.05885
2-1/M82N/AN/A
2-6/M820.91886
3-2/M820.70664
4-1-1/M821.09161
4-1/M821.467251
4-3-2/M821.175040.508
4-3/M821.559191
5-3/M821.269470.467
6-2/M821.74323
6-3/M820.852270.375
7-1/M821.303720.598
7-2/M821.177610.291
9-3-2/M821.467631

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.83180.358
IL7-5/WTpooled0.78602
IL7-3/WTpooled0.77830.418
IL12-4/WTpooled0.962251
IL1-4/WTpooled0.919970.834
WT/WTpooled1.231060.874

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.229090.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.040220.921
DC3000/delta hrp 6h0.73990.95
DC3000/delta hrp 12h1.099011
DC3000/delta hrp 24h2.856650.025

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.216620.145
DC3000 delta B/DC3000 delta AB0.96630.745

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.066851
Exp 36h1.653710.489
Exp 60h1.8610.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.099571
Var 0h1.014391
Var 12h I row2-row11.10960.228
Var 12h NI row2-row11.019321
Var 36h I row2-row10.81931
Var 36h NI row2-row11.003321
Var 60h I row2-row10.705250.285
Var 60h NI row2-row10.942841
Time course 0hI-0hNI1.095920.799
Time course 12hI-12hNI1.266430.009
Time course 36hI-36hNI1.774310.005
Time course 60hI-60hNI4.197740.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.105920.408
transgenic ySAMdc/azygous control (breaker)1.213640.161
transgenic ySAMdc/azygous control (red)0.831551

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.920630.146

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.76380.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.020971
Manapal/WT (break)1.465750.381
Manapal/WT (red)1.186821