Expression of 1-1-8.3.14.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94449 | 0.664 |
27DAP/17DAP | 1.05175 | 0.932 |
39DAP/27DAP | 0.93061 | 0.641 |
41DAP/39DAP | 0.98914 | 0.967 |
42DAP/41DAP | 1.25626 | 0.481 |
43DAP/42DAP | 1.09434 | 0.937 |
47DAP/43DAP | 0.89058 | 0.613 |
52DAP/47DAP | 1.53863 | 0.308 |
57DAP/52DAP | 1.23837 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74241 | 0.03 |
17DAP/reference | 0.87943 | 0.169 |
27DAP/reference | 0.9056 | 0.327 |
39DAP/reference | 0.84171 | 0.114 |
41DAP/reference | 0.73984 | 0.01 |
42DAP/reference | 0.85307 | 0.01 |
43DAP/reference | 0.92873 | 0.302 |
47DAP/reference | 0.94985 | 0.207 |
52DAP/reference | 0.91255 | 0.25 |
57DAP/reference | 1.08585 | 0.159 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.52327 | 0.431 |
27DAP/17DAP | 1.16522 | 0.909 |
39DAP/27DAP | 0.93381 | 0.703 |
41DAP/39DAP | 1.18367 | 0.417 |
42DAP/41DAP | 0.99065 | 0.62 |
43DAP/42DAP | 1.02294 | 1 |
47DAP/43DAP | 1.15671 | 0.865 |
52DAP/47DAP | 1.04218 | 0.899 |
57DAP/52DAP | 1.49066 | 0.584 |
57DAP/7DAP | 1.22256 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86858 | 0.138 |
17DAP/reference | 0.85582 | 0.108 |
27DAP/reference | 1.00157 | 0.8 |
39DAP/reference | 0.80579 | 0.095 |
41DAP/reference | 0.67685 | 0.058 |
42DAP/reference | 0.71351 | 0.053 |
43DAP/reference | 0.88737 | 0.22 |
47DAP/reference | 0.83209 | 0.293 |
52DAP/reference | 0.95075 | 0.332 |
57DAP/reference | 0.88308 | 0.027 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.015 | 0.951 |
17DAP/reference | 0.83551 | 0.083 |
27DAP/reference | 0.88098 | 0.167 |
39DAP/reference | 0.84519 | 0.189 |
41DAP/reference | 0.84524 | 0.068 |
42DAP/reference | 0.77187 | 0.016 |
43DAP/reference | 0.88774 | 0.307 |
47DAP/reference | 0.7914 | 0.014 |
52DAP/reference | 0.86526 | 0.025 |
57DAP/reference | 0.63553 | 0.004 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15677 | 0.287 |
17DAP/reference | 0.85104 | 0.118 |
27DAP/reference | 1.33364 | 0.271 |
39DAP/reference | 0.85332 | 0.012 |
41DAP/reference | 0.95577 | 0.512 |
42DAP/reference | 0.91786 | 0.22 |
43DAP/reference | 0.80056 | 0.024 |
47DAP/reference | 0.84407 | 0.08 |
52DAP/reference | 0.98828 | 0.718 |
57DAP/reference | 0.99534 | 0.682 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94592 | 1 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 0.98964 | 0.945 |
51DAP/34DAP | 1.12352 | 0.927 |
52DAP/51DAP | 0.76468 | 1 |
53DAP/52DAP | 0.91147 | 0.817 |
55DAP/53DAP | 1.00473 | 0.951 |
57DAP/55DAP | 0.53746 | 0.219 |
62DAP/57DAP | 1.24215 | 0.868 |
68DAP/62DAP | 1.24797 | 1 |
68DAP/14DAP | 2.17624 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.816 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.41675 | |
Immature Eggplant/Mature Eggplant | 0.62525 | |
Ripe Pepper/Ripe Tomato | 0.3933 | |
Mature Eggplant/Ripe Tomato | 0.86969 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.36037 | |
1-1-2/M82 | 1.0341 | 1 |
12-2/M82 | 0.98967 | 1 |
12-4/M82 | 0.99496 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.03756 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.04617 | 1 |
5-3/M82 | 1.11018 | 1 |
6-2/M82 | 0.98001 | |
6-3/M82 | 1.17554 | 1 |
7-1/M82 | 1.05323 | |
7-2/M82 | 1.04285 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.73255 | 0.247 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.02426 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.95165 | 0.834 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.87207 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11706 | 0.692 |
DC3000/delta hrp 6h | 1.01992 | 0.95 |
DC3000/delta hrp 12h | 0.90362 | 1 |
DC3000/delta hrp 24h | 0.88186 | 0.33 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.96803 | 1 |
DC3000 delta B/DC3000 delta AB | 0.76873 | 0.369 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.84071 | 0.328 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03926 | 1 |
Var 0h | 0.52615 | 1 |
Var 12h I row2-row1 | 0.90808 | 0.627 |
Var 12h NI row2-row1 | 0.64196 | 0.627 |
Var 36h I row2-row1 | 0.91845 | 1 |
Var 36h NI row2-row1 | 0.71527 | 0.549 |
Var 60h I row2-row1 | 1.0291 | 0.562 |
Var 60h NI row2-row1 | 1.08763 | 0.904 |
Time course 0hI-0hNI | 1.04663 | 1 |
Time course 12hI-12hNI | 0.99667 | 1 |
Time course 36hI-36hNI | 1.05083 | 0.89 |
Time course 60hI-60hNI | 0.54802 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02731 | 0.571 |
transgenic ySAMdc/azygous control (breaker) | 0.92632 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.90081 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.37238 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.78911 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.85957 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.05127 | 1 |
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