Expression of 1-1-8.3.14.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.944490.664
27DAP/17DAP1.051750.932
39DAP/27DAP0.930610.641
41DAP/39DAP0.989140.967
42DAP/41DAP1.256260.481
43DAP/42DAP1.094340.937
47DAP/43DAP0.890580.613
52DAP/47DAP1.538630.308
57DAP/52DAP1.238370.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.742410.03
17DAP/reference0.879430.169
27DAP/reference0.90560.327
39DAP/reference0.841710.114
41DAP/reference0.739840.01
42DAP/reference0.853070.01
43DAP/reference0.928730.302
47DAP/reference0.949850.207
52DAP/reference0.912550.25
57DAP/reference1.085850.159

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.523270.431
27DAP/17DAP1.165220.909
39DAP/27DAP0.933810.703
41DAP/39DAP1.183670.417
42DAP/41DAP0.990650.62
43DAP/42DAP1.022941
47DAP/43DAP1.156710.865
52DAP/47DAP1.042180.899
57DAP/52DAP1.490660.584
57DAP/7DAP1.22256

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.868580.138
17DAP/reference0.855820.108
27DAP/reference1.001570.8
39DAP/reference0.805790.095
41DAP/reference0.676850.058
42DAP/reference0.713510.053
43DAP/reference0.887370.22
47DAP/reference0.832090.293
52DAP/reference0.950750.332
57DAP/reference0.883080.027

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.0150.951
17DAP/reference0.835510.083
27DAP/reference0.880980.167
39DAP/reference0.845190.189
41DAP/reference0.845240.068
42DAP/reference0.771870.016
43DAP/reference0.887740.307
47DAP/reference0.79140.014
52DAP/reference0.865260.025
57DAP/reference0.635530.004

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.156770.287
17DAP/reference0.851040.118
27DAP/reference1.333640.271
39DAP/reference0.853320.012
41DAP/reference0.955770.512
42DAP/reference0.917860.22
43DAP/reference0.800560.024
47DAP/reference0.844070.08
52DAP/reference0.988280.718
57DAP/reference0.995340.682

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.945921
26DAP/20DAPN/AN/A
34DAP/26DAP0.989640.945
51DAP/34DAP1.123520.927
52DAP/51DAP0.764681
53DAP/52DAP0.911470.817
55DAP/53DAP1.004730.951
57DAP/55DAP0.537460.219
62DAP/57DAP1.242150.868
68DAP/62DAP1.247971
68DAP/14DAP2.17624

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.816

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.41675
Immature Eggplant/Mature Eggplant0.62525
Ripe Pepper/Ripe Tomato0.3933
Mature Eggplant/Ripe Tomato0.869691

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.36037
1-1-2/M821.03411
12-2/M820.989671
12-4/M820.99496
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M821.03756
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.046171
5-3/M821.110181
6-2/M820.98001
6-3/M821.175541
7-1/M821.05323
7-2/M821.04285
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.732550.247
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.024261
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.951650.834
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.872070.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.117060.692
DC3000/delta hrp 6h1.019920.95
DC3000/delta hrp 12h0.903621
DC3000/delta hrp 24h0.881860.33

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.968031
DC3000 delta B/DC3000 delta AB0.768730.369

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.840710.328
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.039261
Var 0h0.526151
Var 12h I row2-row10.908080.627
Var 12h NI row2-row10.641960.627
Var 36h I row2-row10.918451
Var 36h NI row2-row10.715270.549
Var 60h I row2-row11.02910.562
Var 60h NI row2-row11.087630.904
Time course 0hI-0hNI1.046631
Time course 12hI-12hNI0.996671
Time course 36hI-36hNI1.050830.89
Time course 60hI-60hNI0.548020.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.027310.571
transgenic ySAMdc/azygous control (breaker)0.926320.49
transgenic ySAMdc/azygous control (red)0.900811

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.372380.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.789110.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.859571
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.051271