Expression of 1-1-8.3.14.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.779950.166
27DAP/17DAP0.8470.602
39DAP/27DAP1.472520.177
41DAP/39DAP0.56270.041
42DAP/41DAP0.993351
43DAP/42DAP1.062711
47DAP/43DAP0.537630.05
52DAP/47DAP1.257880.478
57DAP/52DAP1.305990.904

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.951520.007
17DAP/reference1.07190.957
27DAP/reference0.626780.012
39DAP/reference0.670570.039
41DAP/reference0.755830.026
42DAP/reference1.062460.609
43DAP/reference0.775010.051
47DAP/reference0.870610.007
52DAP/reference0.586610.019
57DAP/reference0.756090.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.957010.644
27DAP/17DAP1.088870.724
39DAP/27DAP0.786780.159
41DAP/39DAP1.286470.887
42DAP/41DAP1.104770.976
43DAP/42DAP0.849110.038
47DAP/43DAP0.946640.696
52DAP/47DAP0.582170.041
57DAP/52DAP0.793010.346
57DAP/7DAP0.310071

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.312260.024
17DAP/reference2.192330.006
27DAP/reference1.49450.01
39DAP/reference1.375220.012
41DAP/reference1.689430.01
42DAP/reference1.70490.009
43DAP/reference1.40450.009
47DAP/reference1.134930.298
52DAP/reference1.395090.071
57DAP/reference1.06340.698

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.228170.41
17DAP/reference1.733370.007
27DAP/reference1.49390.052
39DAP/reference0.89970.136
41DAP/reference1.328710.035
42DAP/reference1.418030.008
43DAP/reference0.816920.217
47DAP/reference1.135440.197
52DAP/reference0.619880.005
57DAP/reference0.710430.037

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.14180.016
17DAP/reference1.404430.298
27DAP/reference1.544560.021
39DAP/reference1.447920.013
41DAP/reference1.11740.257
42DAP/reference1.134830.265
43DAP/reference1.167840.264
47DAP/reference0.547760.005
52DAP/reference0.793820.22
57DAP/reference0.880330.124

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.948751
26DAP/20DAP3.584190.097
34DAP/26DAP0.756640.261
51DAP/34DAP0.850550.385
52DAP/51DAP0.865641
53DAP/52DAP0.851090.455
55DAP/53DAP0.775610.203
57DAP/55DAP1.422660.311
62DAP/57DAP1.146920.678
68DAP/62DAP0.746220.429
68DAP/14DAP1.009121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.16430.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.794130.249
Mature Green Tomato/Ripe Tomato1.851960.095
Immature Eggplant/Mature Eggplant1.091520.198
Ripe Pepper/Ripe Tomato1.218671
Mature Eggplant/Ripe Tomato1.081110.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.014331
1-1-2/M821.13281
12-2/M820.838810.955
12-4/M821.161321
1-3/M821.909580.248
2-1-1/M821.080731
2-1/M821.180750.345
2-6/M821.230670.351
3-2/M821.044310.549
4-1-1/M821.646391
4-1/M821.804910.853
4-3-2/M821.758510.246
4-3/M821.485370.268
5-3/M821.328790.572
6-2/M822.335270.235
6-3/M821.049721
7-1/M821.127151
7-2/M821.619290.291
9-3-2/M821.524281

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.32570.277
IL2-6/WTpooled0.831620.473
IL7-5/WTpooled0.764841
IL7-3/WTpooled1.287130.362
IL12-4/WTpooled0.944230.71
IL1-4/WTpooled1.303940.426
WT/WTpooled1.035991

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.233540.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.064420.921
DC3000/delta hrp 6h1.04131
DC3000/delta hrp 12h1.368131
DC3000/delta hrp 24h1.13130.322

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.14675
DC3000 delta B/DC3000 delta AB1.686480.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.240891
Exp 36h1.345290.693
Exp 60h1.688340.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.985751
Var 0h0.457431
Var 12h I row2-row11.117140.736
Var 12h NI row2-row11.05941
Var 36h I row2-row11.217590.309
Var 36h NI row2-row10.868130.549
Var 60h I row2-row10.765610.293
Var 60h NI row2-row10.824960.431
Time course 0hI-0hNI1.099150.603
Time course 12hI-12hNI1.096590.493
Time course 36hI-36hNI1.36460.023
Time course 60hI-60hNI2.948450.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.081990.798
transgenic ySAMdc/azygous control (breaker)0.987521
transgenic ySAMdc/azygous control (red)1.188410.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.29810.213

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.676440.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.058980.307
Manapal/WT (break)0.940971
Manapal/WT (red)0.865860.229