Expression of 1-1-8.3.14.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78676 | 0.095 |
27DAP/17DAP | 0.88763 | 0.736 |
39DAP/27DAP | 1.40024 | 0.299 |
41DAP/39DAP | 0.51705 | 0.041 |
42DAP/41DAP | 0.83115 | 1 |
43DAP/42DAP | 1.03456 | 1 |
47DAP/43DAP | 0.54218 | 0.049 |
52DAP/47DAP | 1.19274 | 0.657 |
57DAP/52DAP | 0.98009 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.99454 | 0.006 |
17DAP/reference | 1.04418 | 0.858 |
27DAP/reference | 0.77784 | 0.073 |
39DAP/reference | 0.73413 | 0.058 |
41DAP/reference | 0.83733 | 0.114 |
42DAP/reference | 1.23211 | 0.025 |
43DAP/reference | 0.86382 | 0.021 |
47DAP/reference | 1.00582 | 0.764 |
52DAP/reference | 0.74834 | 0.028 |
57DAP/reference | 0.766 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89735 | 0.09 |
27DAP/17DAP | 0.94815 | 0.854 |
39DAP/27DAP | 0.98321 | 0.984 |
41DAP/39DAP | 1.0275 | 1 |
42DAP/41DAP | 1.02455 | 0.892 |
43DAP/42DAP | 0.92372 | 0.367 |
47DAP/43DAP | 0.94311 | 0.764 |
52DAP/47DAP | 0.70102 | 0.08 |
57DAP/52DAP | 0.95258 | 0.668 |
57DAP/7DAP | 0.62268 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 3.06137 | 0.024 |
17DAP/reference | 2.25506 | 0.006 |
27DAP/reference | 1.69798 | 0.007 |
39DAP/reference | 1.37157 | 0.016 |
41DAP/reference | 1.55176 | 0.011 |
42DAP/reference | 1.47021 | 0.016 |
43DAP/reference | 1.44059 | 0.013 |
47DAP/reference | 1.15284 | 0.458 |
52DAP/reference | 1.30182 | 0.286 |
57DAP/reference | 1.0094 | 0.569 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.71303 | 0.175 |
17DAP/reference | 2.81301 | 0.008 |
27DAP/reference | 1.72001 | 0.056 |
39DAP/reference | 1.26766 | 0.247 |
41DAP/reference | 1.87056 | 0.02 |
42DAP/reference | 1.99831 | 0.007 |
43DAP/reference | 1.07857 | 1 |
47DAP/reference | 1.31958 | 0.008 |
52DAP/reference | 0.88337 | 0.143 |
57DAP/reference | 0.89063 | 0.278 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.21346 | 0.016 |
17DAP/reference | 1.54797 | 0.191 |
27DAP/reference | 1.77602 | 0.02 |
39DAP/reference | 1.73415 | 0.008 |
41DAP/reference | 1.29482 | 0.013 |
42DAP/reference | 1.3453 | 0.054 |
43DAP/reference | 1.5045 | 0.029 |
47DAP/reference | 0.67777 | 0.013 |
52DAP/reference | 1.14961 | 0.384 |
57DAP/reference | 1.20423 | 0.285 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.698 | 0.787 |
26DAP/20DAP | 1.4312 | 0.219 |
34DAP/26DAP | 0.84411 | 0.539 |
51DAP/34DAP | 1.02394 | 0.949 |
52DAP/51DAP | 1.07534 | 0.454 |
53DAP/52DAP | 1.16967 | 0.502 |
55DAP/53DAP | 1.03565 | 0.911 |
57DAP/55DAP | 1.08571 | 0.947 |
62DAP/57DAP | 1.02243 | 1 |
68DAP/62DAP | 1.02415 | 0.914 |
68DAP/14DAP | 0.88811 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.49683 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.8479 | 0.312 |
Mature Green Tomato/Ripe Tomato | 2.2257 | 0.03 |
Immature Eggplant/Mature Eggplant | 1.01513 | 1 |
Ripe Pepper/Ripe Tomato | 1.03211 | 1 |
Mature Eggplant/Ripe Tomato | 1.26089 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03422 | 0.877 |
1-1-2/M82 | 1.14043 | 0.977 |
12-2/M82 | 0.84852 | 0.955 |
12-4/M82 | 1.06197 | 1 |
1-3/M82 | 1.86899 | 0.277 |
2-1-1/M82 | 0.84342 | 0.683 |
2-1/M82 | 0.8142 | 0.519 |
2-6/M82 | 1.0843 | 0.395 |
3-2/M82 | 1.24308 | 0.967 |
4-1-1/M82 | 1.05465 | 1 |
4-1/M82 | 1.50113 | |
4-3-2/M82 | 1.38713 | 0.253 |
4-3/M82 | 1.1577 | 1 |
5-3/M82 | 1.3154 | 0.572 |
6-2/M82 | 1.76482 | 0.235 |
6-3/M82 | 0.94042 | 1 |
7-1/M82 | 1.07222 | 1 |
7-2/M82 | 1.11233 | 1 |
9-3-2/M82 | 1.63654 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.89794 | |
IL2-6/WTpooled | 1.06289 | 0.788 |
IL7-5/WTpooled | 0.46643 | |
IL7-3/WTpooled | 0.78482 | 0.418 |
IL12-4/WTpooled | 0.98443 | 1 |
IL1-4/WTpooled | 1.28197 | 1 |
WT/WTpooled | 1.04215 | 0.805 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.27827 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99193 | 1 |
DC3000/delta hrp 6h | 1.07585 | 1 |
DC3000/delta hrp 12h | 2.4183 | 1 |
DC3000/delta hrp 24h | 1.13932 | 0.336 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.19889 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.64919 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.22391 | 1 |
Exp 36h | 1.23429 | 1 |
Exp 60h | 1.66449 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99481 | 1 |
Var 0h | 0.55207 | 0.936 |
Var 12h I row2-row1 | 1.04918 | 0.736 |
Var 12h NI row2-row1 | 1.08432 | 0.161 |
Var 36h I row2-row1 | 1.01357 | 1 |
Var 36h NI row2-row1 | 0.91447 | 0.522 |
Var 60h I row2-row1 | 0.80941 | 0.292 |
Var 60h NI row2-row1 | 0.85212 | 0.63 |
Time course 0hI-0hNI | 1.07156 | 0.799 |
Time course 12hI-12hNI | 0.89105 | 0.867 |
Time course 36hI-36hNI | 1.52686 | 0.006 |
Time course 60hI-60hNI | 2.99054 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.18946 | 0.318 |
transgenic ySAMdc/azygous control (breaker) | 0.93553 | 1 |
transgenic ySAMdc/azygous control (red) | 1.28668 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.21976 | 0.234 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.71823 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.24227 | 0.307 |
Manapal/WT (break) | 1.01668 | 1 |
Manapal/WT (red) | 0.90653 | 0.503 |
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