Expression of 1-1-8.3.14.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.786760.095
27DAP/17DAP0.887630.736
39DAP/27DAP1.400240.299
41DAP/39DAP0.517050.041
42DAP/41DAP0.831151
43DAP/42DAP1.034561
47DAP/43DAP0.542180.049
52DAP/47DAP1.192740.657
57DAP/52DAP0.980090.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.994540.006
17DAP/reference1.044180.858
27DAP/reference0.777840.073
39DAP/reference0.734130.058
41DAP/reference0.837330.114
42DAP/reference1.232110.025
43DAP/reference0.863820.021
47DAP/reference1.005820.764
52DAP/reference0.748340.028
57DAP/reference0.7660.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.897350.09
27DAP/17DAP0.948150.854
39DAP/27DAP0.983210.984
41DAP/39DAP1.02751
42DAP/41DAP1.024550.892
43DAP/42DAP0.923720.367
47DAP/43DAP0.943110.764
52DAP/47DAP0.701020.08
57DAP/52DAP0.952580.668
57DAP/7DAP0.622680.186

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.061370.024
17DAP/reference2.255060.006
27DAP/reference1.697980.007
39DAP/reference1.371570.016
41DAP/reference1.551760.011
42DAP/reference1.470210.016
43DAP/reference1.440590.013
47DAP/reference1.152840.458
52DAP/reference1.301820.286
57DAP/reference1.00940.569

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.713030.175
17DAP/reference2.813010.008
27DAP/reference1.720010.056
39DAP/reference1.267660.247
41DAP/reference1.870560.02
42DAP/reference1.998310.007
43DAP/reference1.078571
47DAP/reference1.319580.008
52DAP/reference0.883370.143
57DAP/reference0.890630.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.213460.016
17DAP/reference1.547970.191
27DAP/reference1.776020.02
39DAP/reference1.734150.008
41DAP/reference1.294820.013
42DAP/reference1.34530.054
43DAP/reference1.50450.029
47DAP/reference0.677770.013
52DAP/reference1.149610.384
57DAP/reference1.204230.285

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.6980.787
26DAP/20DAP1.43120.219
34DAP/26DAP0.844110.539
51DAP/34DAP1.023940.949
52DAP/51DAP1.075340.454
53DAP/52DAP1.169670.502
55DAP/53DAP1.035650.911
57DAP/55DAP1.085710.947
62DAP/57DAP1.022431
68DAP/62DAP1.024150.914
68DAP/14DAP0.888110.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.496830.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.84790.312
Mature Green Tomato/Ripe Tomato2.22570.03
Immature Eggplant/Mature Eggplant1.015131
Ripe Pepper/Ripe Tomato1.032111
Mature Eggplant/Ripe Tomato1.260890.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.034220.877
1-1-2/M821.140430.977
12-2/M820.848520.955
12-4/M821.061971
1-3/M821.868990.277
2-1-1/M820.843420.683
2-1/M820.81420.519
2-6/M821.08430.395
3-2/M821.243080.967
4-1-1/M821.054651
4-1/M821.50113
4-3-2/M821.387130.253
4-3/M821.15771
5-3/M821.31540.572
6-2/M821.764820.235
6-3/M820.940421
7-1/M821.072221
7-2/M821.112331
9-3-2/M821.636540.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.89794
IL2-6/WTpooled1.062890.788
IL7-5/WTpooled0.46643
IL7-3/WTpooled0.784820.418
IL12-4/WTpooled0.984431
IL1-4/WTpooled1.281971
WT/WTpooled1.042150.805

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.278271

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.991931
DC3000/delta hrp 6h1.075851
DC3000/delta hrp 12h2.41831
DC3000/delta hrp 24h1.139320.336

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.198890.042
DC3000 delta B/DC3000 delta AB1.649190.079

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.223911
Exp 36h1.234291
Exp 60h1.664490.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.994811
Var 0h0.552070.936
Var 12h I row2-row11.049180.736
Var 12h NI row2-row11.084320.161
Var 36h I row2-row11.013571
Var 36h NI row2-row10.914470.522
Var 60h I row2-row10.809410.292
Var 60h NI row2-row10.852120.63
Time course 0hI-0hNI1.071560.799
Time course 12hI-12hNI0.891050.867
Time course 36hI-36hNI1.526860.006
Time course 60hI-60hNI2.990540.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.189460.318
transgenic ySAMdc/azygous control (breaker)0.935531
transgenic ySAMdc/azygous control (red)1.286680.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.219760.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.718230.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.242270.307
Manapal/WT (break)1.016681
Manapal/WT (red)0.906530.503