Expression of 1-1-8.3.14.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.783580.06
27DAP/17DAP1.100641
39DAP/27DAP1.181140.566
41DAP/39DAP0.930060.701
42DAP/41DAP0.801370.774
43DAP/42DAP0.948420.867
47DAP/43DAP0.872790.58
52DAP/47DAP1.766540.303
57DAP/52DAP0.948670.927

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.433290.01
17DAP/reference0.97720.701
27DAP/reference0.86570.024
39DAP/reference0.895190.324
41DAP/reference1.021220.759
42DAP/reference1.282110.001
43DAP/reference1.003320.904
47DAP/reference1.000170.72
52DAP/reference0.86550.118
57DAP/reference0.81410.035

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.90870.363
27DAP/17DAP1.025040.924
39DAP/27DAP0.819380.05
41DAP/39DAP0.837430.178
42DAP/41DAP1.156550.327
43DAP/42DAP0.963650.641
47DAP/43DAP0.9870.939
52DAP/47DAP0.864890.612
57DAP/52DAP0.98670.804
57DAP/7DAP0.733041

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.335620.108
17DAP/reference1.132460.006
27DAP/reference1.108810.035
39DAP/reference0.946630.025
41DAP/reference0.983620.565
42DAP/reference0.896730.025
43DAP/reference1.058390.483
47DAP/reference1.054970.868
52DAP/reference0.974890.435
57DAP/reference0.970970.458

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.481960.055
17DAP/reference1.669560.008
27DAP/reference1.551790.022
39DAP/reference1.013480.661
41DAP/reference1.434480.017
42DAP/reference1.513780.121
43DAP/reference1.262750.188
47DAP/reference1.191960.112
52DAP/reference0.859240.009
57DAP/reference0.995740.789

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.198540.027
17DAP/reference1.277880.157
27DAP/reference1.032010.531
39DAP/reference1.079090.196
41DAP/reference1.020410.754
42DAP/reference1.299220.08
43DAP/reference1.186150.362
47DAP/reference0.847770.027
52DAP/reference0.965650.573
57DAP/reference1.117420.228

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.903660.65
26DAP/20DAP0.997221
34DAP/26DAP0.94360.857
51DAP/34DAP0.94750.667
52DAP/51DAP1.047720.783
53DAP/52DAP1.241790.58
55DAP/53DAP0.91807
57DAP/55DAP0.828870.234
62DAP/57DAP1.075770.723
68DAP/62DAP0.927710.722
68DAP/14DAP0.823191

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.338760.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.892290.418
Mature Green Tomato/Ripe Tomato1.421320.299
Immature Eggplant/Mature Eggplant1.123910.239
Ripe Pepper/Ripe Tomato0.810971
Mature Eggplant/Ripe Tomato1.166310.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.12320.877
1-1-2/M821.058211
12-2/M820.937430.955
12-4/M820.956880.619
1-3/M820.927461
2-1-1/M821.062440.764
2-1/M821.15821
2-6/M820.939591
3-2/M820.995281
4-1-1/M821.238121
4-1/M820.965971
4-3-2/M821.180441
4-3/M821.19490.268
5-3/M821.122250.496
6-2/M821.058771
6-3/M821.000621
7-1/M820.997911
7-2/M821.131111
9-3-2/M821.164631

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.443210.277
IL2-6/WTpooled0.752070.473
IL7-5/WTpooled1.300810.587
IL7-3/WTpooled1.481941
IL12-4/WTpooled1.171230.785
IL1-4/WTpooled1.042881
WT/WTpooled1.01091

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.3611

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.067480.758
DC3000/delta hrp 6h1.195550.978
DC3000/delta hrp 12h0.957951
DC3000/delta hrp 24h0.926240.354

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.1992
DC3000 delta B/DC3000 delta AB1.547840.084

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.274951
Exp 36h1.11961
Exp 60h1.46840.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001261
Var 0h0.464511
Var 12h I row2-row11.067180.58
Var 12h NI row2-row11.037981
Var 36h I row2-row10.933861
Var 36h NI row2-row10.910160.645
Var 60h I row2-row10.844080.439
Var 60h NI row2-row10.857690.516
Time course 0hI-0hNI1.133270.218
Time course 12hI-12hNI1.005320.88
Time course 36hI-36hNI1.22950.128
Time course 60hI-60hNI2.280160.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.031121
transgenic ySAMdc/azygous control (breaker)1.027271
transgenic ySAMdc/azygous control (red)1.100640.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.0580.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.794220.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.121980.307
Manapal/WT (break)0.900830.333
Manapal/WT (red)0.979170.863