Expression of 1-1-8.3.14.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78358 | 0.06 |
27DAP/17DAP | 1.10064 | 1 |
39DAP/27DAP | 1.18114 | 0.566 |
41DAP/39DAP | 0.93006 | 0.701 |
42DAP/41DAP | 0.80137 | 0.774 |
43DAP/42DAP | 0.94842 | 0.867 |
47DAP/43DAP | 0.87279 | 0.58 |
52DAP/47DAP | 1.76654 | 0.303 |
57DAP/52DAP | 0.94867 | 0.927 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43329 | 0.01 |
17DAP/reference | 0.9772 | 0.701 |
27DAP/reference | 0.8657 | 0.024 |
39DAP/reference | 0.89519 | 0.324 |
41DAP/reference | 1.02122 | 0.759 |
42DAP/reference | 1.28211 | 0.001 |
43DAP/reference | 1.00332 | 0.904 |
47DAP/reference | 1.00017 | 0.72 |
52DAP/reference | 0.8655 | 0.118 |
57DAP/reference | 0.8141 | 0.035 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9087 | 0.363 |
27DAP/17DAP | 1.02504 | 0.924 |
39DAP/27DAP | 0.81938 | 0.05 |
41DAP/39DAP | 0.83743 | 0.178 |
42DAP/41DAP | 1.15655 | 0.327 |
43DAP/42DAP | 0.96365 | 0.641 |
47DAP/43DAP | 0.987 | 0.939 |
52DAP/47DAP | 0.86489 | 0.612 |
57DAP/52DAP | 0.9867 | 0.804 |
57DAP/7DAP | 0.73304 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33562 | 0.108 |
17DAP/reference | 1.13246 | 0.006 |
27DAP/reference | 1.10881 | 0.035 |
39DAP/reference | 0.94663 | 0.025 |
41DAP/reference | 0.98362 | 0.565 |
42DAP/reference | 0.89673 | 0.025 |
43DAP/reference | 1.05839 | 0.483 |
47DAP/reference | 1.05497 | 0.868 |
52DAP/reference | 0.97489 | 0.435 |
57DAP/reference | 0.97097 | 0.458 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.48196 | 0.055 |
17DAP/reference | 1.66956 | 0.008 |
27DAP/reference | 1.55179 | 0.022 |
39DAP/reference | 1.01348 | 0.661 |
41DAP/reference | 1.43448 | 0.017 |
42DAP/reference | 1.51378 | 0.121 |
43DAP/reference | 1.26275 | 0.188 |
47DAP/reference | 1.19196 | 0.112 |
52DAP/reference | 0.85924 | 0.009 |
57DAP/reference | 0.99574 | 0.789 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19854 | 0.027 |
17DAP/reference | 1.27788 | 0.157 |
27DAP/reference | 1.03201 | 0.531 |
39DAP/reference | 1.07909 | 0.196 |
41DAP/reference | 1.02041 | 0.754 |
42DAP/reference | 1.29922 | 0.08 |
43DAP/reference | 1.18615 | 0.362 |
47DAP/reference | 0.84777 | 0.027 |
52DAP/reference | 0.96565 | 0.573 |
57DAP/reference | 1.11742 | 0.228 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90366 | 0.65 |
26DAP/20DAP | 0.99722 | 1 |
34DAP/26DAP | 0.9436 | 0.857 |
51DAP/34DAP | 0.9475 | 0.667 |
52DAP/51DAP | 1.04772 | 0.783 |
53DAP/52DAP | 1.24179 | 0.58 |
55DAP/53DAP | 0.91807 | |
57DAP/55DAP | 0.82887 | 0.234 |
62DAP/57DAP | 1.07577 | 0.723 |
68DAP/62DAP | 0.92771 | 0.722 |
68DAP/14DAP | 0.82319 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.33876 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.89229 | 0.418 |
Mature Green Tomato/Ripe Tomato | 1.42132 | 0.299 |
Immature Eggplant/Mature Eggplant | 1.12391 | 0.239 |
Ripe Pepper/Ripe Tomato | 0.81097 | 1 |
Mature Eggplant/Ripe Tomato | 1.16631 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.1232 | 0.877 |
1-1-2/M82 | 1.05821 | 1 |
12-2/M82 | 0.93743 | 0.955 |
12-4/M82 | 0.95688 | 0.619 |
1-3/M82 | 0.92746 | 1 |
2-1-1/M82 | 1.06244 | 0.764 |
2-1/M82 | 1.15821 | |
2-6/M82 | 0.93959 | 1 |
3-2/M82 | 0.99528 | 1 |
4-1-1/M82 | 1.23812 | 1 |
4-1/M82 | 0.96597 | 1 |
4-3-2/M82 | 1.18044 | 1 |
4-3/M82 | 1.1949 | 0.268 |
5-3/M82 | 1.12225 | 0.496 |
6-2/M82 | 1.05877 | 1 |
6-3/M82 | 1.00062 | 1 |
7-1/M82 | 0.99791 | 1 |
7-2/M82 | 1.13111 | 1 |
9-3-2/M82 | 1.16463 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.44321 | 0.277 |
IL2-6/WTpooled | 0.75207 | 0.473 |
IL7-5/WTpooled | 1.30081 | 0.587 |
IL7-3/WTpooled | 1.48194 | 1 |
IL12-4/WTpooled | 1.17123 | 0.785 |
IL1-4/WTpooled | 1.04288 | 1 |
WT/WTpooled | 1.0109 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.361 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06748 | 0.758 |
DC3000/delta hrp 6h | 1.19555 | 0.978 |
DC3000/delta hrp 12h | 0.95795 | 1 |
DC3000/delta hrp 24h | 0.92624 | 0.354 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.1992 | |
DC3000 delta B/DC3000 delta AB | 1.54784 | 0.084 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.27495 | 1 |
Exp 36h | 1.1196 | 1 |
Exp 60h | 1.4684 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00126 | 1 |
Var 0h | 0.46451 | 1 |
Var 12h I row2-row1 | 1.06718 | 0.58 |
Var 12h NI row2-row1 | 1.03798 | 1 |
Var 36h I row2-row1 | 0.93386 | 1 |
Var 36h NI row2-row1 | 0.91016 | 0.645 |
Var 60h I row2-row1 | 0.84408 | 0.439 |
Var 60h NI row2-row1 | 0.85769 | 0.516 |
Time course 0hI-0hNI | 1.13327 | 0.218 |
Time course 12hI-12hNI | 1.00532 | 0.88 |
Time course 36hI-36hNI | 1.2295 | 0.128 |
Time course 60hI-60hNI | 2.28016 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03112 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.02727 | 1 |
transgenic ySAMdc/azygous control (red) | 1.10064 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.058 | 0.334 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.79422 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.12198 | 0.307 |
Manapal/WT (break) | 0.90083 | 0.333 |
Manapal/WT (red) | 0.97917 | 0.863 |
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